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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:04:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica rapa subsp. chinensis BcPR5 mRNA for pathogenesis-related 5, complete cds.
AB458897.1:44-63
CACTCACTCCTTGCTCAAGTGGAGCTCGAT44CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT
Brassica rapa subsp. chinensis pathogenesis-related 5 protein (PR5) mRNA, complete cds.
FJ605478.1:44-63
CACTCACTCCTTGCTCAAGTGGAGCTCGAT44CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT
Brassica rapa pathogenesis-related group 5 protein (BFTP) mRNA, complete cds.
U71244.1:23-42
CCTTGCTCAAGTGGAGCTCGAT23CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT
Colias croceus genome assembly, chromosome: 13.
HG991971.1:6586404-6586423
AGAGGTACTTTACGTGTCCGCCTAAATATG6586404GAGGTTTCGTGAAGCCATTGTATGTAACTGTTGGTGACTTCCCTGAAGAA
Pyralis farinalis genome assembly, chromosome: 2.
OX382258.1:9985446-9985465
CAAGAGTATATATAAACAAACCATAAAACT9985446GAGGTTTCGTGAAGCCATTGTTTTAACTAGGGTCCTGAATGCAGTTTGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAATGGCTTCACGAAACCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATGGCTTCACGAAACCTC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=CAATGGCTTCACGAAACCTC&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGTTTCGTGAAGCCATTG&k=0&no_gap=0&offset=0&limit=47
0.132 | 0.001 | cgi_end;

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