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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:21:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens 3 BAC RP11-354H21 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC117462.5:10554-10573
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA10554CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:78070174-78070193
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA78070174CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Homo sapiens isolate CHM13 chromosome 3.
CP068275.2:78058555-78058574
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA78058555CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Homo sapiens isolate NA24385 chromosome 3.
CP139518.1:77978882-77978901
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA77978882CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Homo sapiens isolate NA24385 chromosome 3.
CP139541.1:78063214-78063233
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA78063214CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Sciurus carolinensis genome assembly, chromosome: 15.
LR738605.1:24265255-24265274
CCCCCTTTGTCCACTTGGAATTGAAAACTC24265255CACCACTCTGCTCTTCCTCCCGTTCCTTAACCTCCTTATTTACTTGGAGA
Pollachius pollachius genome assembly, chromosome: 7.
OX465130.1:9478991-9479010
TGTTAGTTTGATAGACTGTGGTCTCTGACT9478991CACCACTCTGCTCTTCCTCCTCTGTTAGGTTCCACTGAGACAGTAGAGAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58091930-58091949
CTGGGTTATGGGCCCAGGACGCTTCCGCTG58091930CACCACTCTGCTCTTCCTCCATGCAGTTAACCTCCTGCCGTACTTCACAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58112752-58112771
CTGGGTTATGGGCCCAGCACGCTTCCGCTG58112752CACCACTCTGCTCTTCCTCCCTGCAGTTAACCTCCTGCCGTACTTCACAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58118548-58118567
CTGGGTTATGGGCCCAGCACGCTTCCGCAG58118548CACCACTCTGCTCTTCCTCCCTGCAGTTAACCTCCTGCCGTACTTCACAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58120460-58120479
CTGGGTTATGGGCCCAGCACGCTTCCGCTG58120460CACCACTCTGCTCTTCCTCCCTGCAGTTAACCTCCTGCCGTACTTCACAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58121062-58121081
CTGGGTTATGGGCCCAGCACGCTTCCGCTG58121062CACCACTCTGCTCTTCCTCCCTGCAGTTAACCTCCTGCCGTACTTCACAT
Eukaryotic synthetic construct chromosome 3.
CP034502.1:77992870-77992889
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA77992870CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Eukaryotic synthetic construct chromosome 3.
CP034527.1:77992870-77992889
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA77992870CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Acomys percivali genome assembly, chromosome: 15.
OU015756.1:46663891-46663910
CCTTGATGGGACACTTAAACTCATCTGTGA46663891GGAGGAAGAGCAGAGTGGTGAGGGACAGGGAAACGGGCTGGGACTGGTAG
Peromyscus eremicus genome assembly, chromosome: 23.
OX460416.1:23068569-23068588
GGACCAGAATAGCTCATAGTGTGGTTGACT23068569GGAGGAAGAGCAGAGTGGTGATAGGAAAGGACATGGAAAGACATCACTCT
Peromyscus eremicus genome assembly, chromosome: 23.
OX460488.1:24824411-24824430
GGACCAGAATAGCTCATAGTGTGGTTGACT24824411GGAGGAAGAGCAGAGTGGTGATAGGAAAGGACATGGAAAGACATCACTCT
Balaenoptera acutorostrata genome assembly, chromosome: 5.
OX465354.1:55813229-55813248
TGCACAGAAGGATACATTTCTGTGGGTCAG55813229GGAGGAAGAGCAGAGTGGTGTGGGTGAGGTACACGAAGCATTGGAGAAAC
Electrona antarctica genome assembly, chromosome: 9.
OX578254.1:36354799-36354818
GGGCTGGGACAAGATGGAGGAGGAGGAGAA36354799GGAGGAAGAGCAGAGTGGTGAAGGACCGAGGGCAGAGACGGACGTCCTGA
Fringilla coelebs genome assembly, chromosome: 2.
OY740725.1:9847404-9847423
TGGTGTGCTGCAGCATCCCTGGGAGAGGAG9847404GGAGGAAGAGCAGAGTGGTGAAAAGGGGCTGGGAGCTCAGCCTTCTCTCC
Homo sapiens clone RP11-21J10, WORKING DRAFT SEQUENCE, 16 unordered pieces.
AC025616.3:100623-100642
GACTAGGAGGCTGGTGTGATCCACAGAGAA100623GGAGGAAGAGCAGAGTGGTGTACTGCTCACCTGAGAGCCACACAGGGTAG
Octopus vulgaris genome assembly, chromosome: 8.
OX597821.1:3899181-3899200
AGAAGAGTGGAGGAAGAAGAGAAGAGTGGA3899181GGAGGAAGAGCAGAGTGGTGGAATATGAAGAGGAGGAGTGTAGAGAAAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACCACTCTGCTCTTCCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCACTCTGCTCTTCCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.205 | 0.197 | search_plus_done; http://172.18.8.135:50400/match?q=CACCACTCTGCTCTTCCTCC&k=0&no_gap=0&offset=0&limit=50
0.332 | 0.127 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGGAAGAGCAGAGTGGTG&k=0&no_gap=0&offset=0&limit=36
0.337 | 0.006 | cgi_end;

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