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Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 12:54:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRPT01_0005O03_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0005O03, mRNA sequence.
CV704760.1:36-55
ATAAAAATATCGAACACGAGTCGCACACAG36CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCG
IC0AAA11AF07RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY263223.1:35-54
ATAAAAATATCGAACACGAGTCGCACACAG35CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA16BH04RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY265135.1:47-66
ATAAAAATATCGAACACGAGTCGCACACAG47CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA29BB06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY270267.1:35-54
ATAAAAATATCGAACACGAGTCGCACACAG35CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA55AC07RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY281841.1:44-63
ATAAAAATATCGAACACGAGTCGCACACAG44CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA73CC06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY289781.1:28-47
AAAATATCGAACACGAGTCGCACACAG28CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA93BC01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY297637.1:141-160
ATAAAAATATCGAACACGAGTCGCACACAG141CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
CR05-C3-700-144-G11-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY792629.1:46-65
TAAAAATATTTTAACACGAGTCGCACACAG46CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA55AC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC07, mRNA sequence.
FC878215.1:44-63
ATAAAAATATCGAACACGAGTCGCACACAG44CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA93BC01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA93BC01, mRNA sequence.
FC887243.1:141-160
ATAAAAATATCGAACACGAGTCGCACACAG141CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA73CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73CC06, mRNA sequence.
FC887611.1:28-47
AAAATATCGAACACGAGTCGCACACAG28CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA11AF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA11AF07, mRNA sequence.
FC893464.1:35-54
ATAAAAATATCGAACACGAGTCGCACACAG35CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA66CH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA66CH02, mRNA sequence.
FC899335.1:44-63
ATAAAAATATCGAACACGAGTCGCACACAG44CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA16BH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA16BH04, mRNA sequence.
FC899961.1:47-66
ATAAAAATATCGAACACGAGTCGCACACAG47CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
IC0AAA29BB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29BB06, mRNA sequence.
FC911580.1:35-54
ATAAAAATATCGAACACGAGTCGCACACAG35CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCT
C32107F02EF RVDevelopN Citrus clementina cDNA clone C32107F02, mRNA sequence.
FC921636.1:13-32
GGTCGCACACAG13CACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCG
Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:4164505-4164524
AGAGAGAGAGAGAGAGAGGATGTTTGGTTA4164505GGGAGAAAGTCAAGAGCGTGCTGTGTGCGACTCGTGTTCGATATTTTTAT
Allacma fusca genome assembly, chromosome: 2.
OX359246.1:17492411-17492430
AAATGCATCTCAGAATTCTCTCCAGGAATT17492411GGGAGAAAGTCAAGAGCGTGAAAATACATAGAGGAGTCAAAAGGGAAGGG

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