GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 05:17:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2F951JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD574108.1:400-421
ATTGTTGTACCCTGCACTATCTACCGCCAC400CACGTTGTGGAATCTCGGATTATAGTTAAACACTAGAATATCATTGGCTTTA
RS1GD76JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD935530.1:415-436
ATTGTTGTACCCTGCATTATCTACCGCCAC415CACGTTGTGGAATCTCGGATTATAGTTAAACACTAGAACATCATTGGCTTTA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_9637.
FX674765.1:272-293
ATTGTTGTACCCTGCACTATCTACCGCCAC272CACGTTGTGGAATCTCGGATTATAGTTAAACACTAGAACATCATTGGCTTTA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_24895.
FX778757.1:137-158
ATTGTTGTACCCTGCACTATCTACCGCCAC137CACGTTGTGGAATCTCGGATTATAGTTAAACACTAGAACATCATTGGCTTTA
TSA: Raphanus sativus RS07374 mRNA sequence.
JT791921.1:264-285
ATTGTTGTACCCTGCACTATCTACCGCCAC264CACGTTGTGGAATCTCGGATTATAGTTAAACACTAGAACATCATTGGCTTTA
RR4AS02TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV567950.1:143-164
TAAAGCCAATGATGTTCTAGTGTTTAACTA143TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAATGCAGGGTACAACAAT
RR4B241TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV568908.1:143-164
TAAAGCCAATGATGTTCTAGTGTTTAACTA143TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAATGCAGGGTACAACAAT
RS3C518TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX904163.1:259-280
TAAAGCCAATGATGTTCTAGTGTTTAACTA259TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAATGCAGGGTACAACAAT
RS3C754TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX904357.1:252-273
TAAAGCCAATGATGTTCTAGTGTTTAACTA252TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAATGCAGGGTACAACAAT
RR1DQ82TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY899080.1:264-285
TAAAGCCAATGATGTTCTAGTGTTTAACTA264TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAATGCAGGGTACAACAAT
RS1E652TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY933243.1:259-280
TAAAGCCAATGATGTTCTAGTGTTTAACTA259TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAGTGCAGGGTACAACAAT
RR1F046TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD533837.1:258-279
TAAAGCCAATGATGTTCTAGTGTTTAACTA258TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAATGCAGGGTACAACAAT
RS2F951TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD570018.1:258-279
TAAAGCCAATGATATTCTAGTGTTTAACTA258TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAGTGCAGGGTACAACAAT
RS3EI84TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD576815.1:259-280
TAAAGCCAATGATGTTCTAGTGTTTAACTA259TAATCCGAGATTCCACAACGTGGTGGCTGTAGATAATGCAGGGTACAACAAT
RS1FV56TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD937836.1:260-281
TAAAGCCAATGATGTTCTAGTGTTTAACTA260TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAGTGCAGGGTACAACAAT
RS1GD76TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD939399.1:262-283
TAAAGCCAATGATGTTCTAGTGTTTAACTA262TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAATGCAGGGTACAACAAT
RR3FY35TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD978215.1:261-282
TAAAGCCAATGATGTTCTAGTGTTTAACTA261TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAGTGCAGGGTACAACAAT
RR3H962TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD982226.1:259-280
TAAAGCCAATGATGTTCTAGTGTTTAACTA259TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAATGCAGGGTACAACAAT
Raphanus sativus mRNA, clone: RSCR10D10, 5' end sequence.
FY442848.1:211-232
TAAAGCCAATGATGTTCTAGTGTTTAACTA211TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAGTGCAGGATACAACAAT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:16265087-16265108
ACTTTAAATACTTTTTGCAGTGTTTAACTA16265087TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAGTGCAGGGTACAACAAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:16265087-16265108
ACTTTAAATACTTTTTGCAGTGTTTAACTA16265087TAATCCGAGATTCCACAACGTGGTGGCGGTAGATAGTGCAGGGTACAACAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACGTTGTGGAATCTCGGATTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACGTTGTGGAATCTCGGATTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.274 | 0.265 | search_plus_done; http://172.18.8.135:50400/match?q=CACGTTGTGGAATCTCGGATTA&k=0&no_gap=0&offset=0&limit=50
1.312 | 1.038 | search_minus_done; http://172.18.8.135:50400/match?q=TAATCCGAGATTCCACAACGTG&k=0&no_gap=0&offset=0&limit=45
1.322 | 0.010 | cgi_end;

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