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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 19:20:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Thellungiella halophila cDNA clone: RTFL01-11-F08, 3'end sequence.
BY807378.1:269-288
AACTTGAGCCAAATTCTTTAAACGTTTAAC269CACTGTACTTGCAGAGGTTTTCGAAACCCATGTACTCGTGCCGTTGGTAT
Thellungiella halophila cDNA clone: RTFL01-49-D22, 3'end sequence.
BY833025.1:264-283
AACTTGAGCCAAATTCTTTAAACGTTTAAC264CACTGTACTTGCAGAGGTTTTCGAAACCCATGTACTCGTGCCGTTGGTAT
RS3GV75JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD953106.1:304-323
TTGACATGATCCAAATTCTTAAACGTTAAC304CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGGAGC
RR4GI47JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD984008.1:243-262
TTGACATGATCCAAATTCTTAAACGTTAAC243CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGGAGC
0270941 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO924710.1:249-268
TTGACATTATCCAGATTGTTAAACCTTAAC249CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGTAAC
0270979 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO949843.1:230-249
TTGACATGATCCAGATTCTTAAACGTTAAC230CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGTAAC
0264076 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO960679.1:205-224
TTGACATTATCCAGATTGTTAAACCTTAAC205CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGTAAC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_15280.
FX658324.1:175-194
TTGACATGATCCAAATTCTTAAACGTTAAC175CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGGAGC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_16552.
FX697125.1:251-270
CTGACATGATCCATATTGTTAAACCTTAAC251CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGCAAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_69115.
FX768075.1:117-136
TTGACATGATCCAAATTCTTAAACGTTAAC117CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGGAGC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:4044438-4044457
CTGACATGATCCATATTGTTAAACCTTAAC4044438CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGCAAC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:15359112-15359131
TTGACATGATCCAAATTCTTAAACGTTAAC15359112CACTGTACTTGCAGAGGTTTTCAAAACCCATGTACTCGTGCCGTTGGAGC
Cardamine chenopodiifolia genome assembly, chromosome: 12.
OZ000470.1:16775778-16775797
TTGAGCCACAAAATTCTTAAAAACGTTAGC16775778CACTGTACTTGCAGAGGTTTTCAAAACCCATATACTCATGCCGTTGGAAT
Sicus ferrugineus genome assembly, chromosome: 1.
OV277348.1:36413897-36413916
ATAAAGCATTTGTTGACCTAACAACTGCGT36413897CACTGTACTTGCAGAGGTTTTTCTCTGTACGGCTATAAGTACTCTCACTT
Brassica oleracea var. viridis mRNA, clone: KALE-051L08, 3' end sequence.
DK534913.1:546-565
GTTGCAACGGCACGAGTACATGGGTTTTGA546AAACCTCTGCAAGTACAGTGGTTAAAGTTTAACAATCTGGATAATGTCAA
Brassica oleracea var. viridis mRNA, clone: KALE-070B14, 3' end sequence.
DK541943.1:512-531
GTTGCAACGGCACGAGTACATGGGTTTTGA512AAACCTCTGCAAGTACAGTGGTTAAAGTTTAACAATCTGGATAATGTCAA
Brassica oleracea var. viridis mRNA, clone: KALE-145I13, 3' end sequence.
DK570762.1:493-512
GTTGCAACGGCACGAGTACATGGGTTTTGA493AAACCTCTGCAAGTACAGTGGTTAAAGTTTAACAATCTGGATAATGTCAA
BNAEN3GH_UP_006_D05_31MAY2006_041 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES993170.1:188-207
GTTACAACGGCACGAGTACATGGGTTTTGA188AAACCTCTGCAAGTACAGTGGTTAAGGT
0263779 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO948043.1:698-717
GTTACAACGGCACGAGTACATGGGTTTTGA698AAACCTCTGCAAGTACAGTGGTTAAGGTTAA
0270760 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO962350.1:398-417
GTTACAACGGCACGAGTACATGGGTTTTGA398AAACCTCTGCAAGTACAGTGGTGAACGTTTAAGAATCTGGATCATGTCAA
pN167 Brassica napus pIJ2925 library Brassica napus var. napus genomic clone pN167, genomic survey sequence.
CZ692843.1:1048-1067
AGTTGCAACGGCACGAGTACATGGGTTTTG1048AAACCTCTGCAAGTACAGTGGTTAAGGTTTAACAATCTGGATCATGTCAG
SIL-017B12TR Sisymbrium irio BAC library SIL Sisymbrium irio genomic clone SIL-017B12, genomic survey sequence.
JJ750588.1:88-107
CATCCAACGGCACGAGTACATGGGCTTCGA88AAACCTCTGCAAGTACAGTGGTTAAAGTTACGGTTCTTTGCTCATGTCAA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:1366102-1366121
GTTGCAACGGCACGAGTACATGGGTTTTGA1366102AAACCTCTGCAAGTACAGTGGTTAAGGTTTAACAATATGGATCATGTCAG
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:60193208-60193227
GTTGCAACGGCACGAGTACATGGGTTTTGA60193208AAACCTCTGCAAGTACAGTGGTTAAAGTTTAACAATCTGGATAATGTCAA
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:20572271-20572290
GTTACAACGGCACGAGTACATGGGTTTTGA20572271AAACCTCTGCAAGTACAGTGGTTAAGGTTTAACAATCTGGATAATGTCAA
Brassica napus unknown mRNA.
DQ062725.1:1023-1042
GTTACAACGGCACGAGTACATGGGTTTTGA1023AAACCTCTGCAAGTACAGTGGTTAA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:15004801-15004820
GTTACAACGGCACGAGTACATGGGTTTTGA15004801AAACCTCTGCAAGTACAGTGGTTAAGGTTTAACAATCTGGATAATGTCAA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:54446938-54446957
GTTGCAACGGCACGAGTACATGGGTTTTGA54446938AAACCTCTGCAAGTACAGTGGTTAAAGTTTAACAATCTGGATAATGTCAA
Brassica rapa genome, scaffold: A04.
LR031576.1:13913980-13913999
GTTGCAACGGCACGAGTACATGGGTTTTGA13913980AAACCTCTGCAAGTACAGTGGTTAAGGTTTAACAATATGGATCATGTCAG
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:53742886-53742905
GTTGCAACGGCACGAGTACATGGGTTTTGA53742886AAACCTCTGCAAGTACAGTGGTTAAAGTTTAACAATCTGGATAATGTCAA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:14166779-14166798
GTTGCAACGGCACGAGTACATGGGTTTTGA14166779AAACCTCTGCAAGTACAGTGGTTAAGGTTTAACAATATGGATCATGTCAG
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:38291389-38291408
GCTCCAACGGCACGAGTACATGGGTTTTGA38291389AAACCTCTGCAAGTACAGTGGTTAACGTTTAAGAATTTGGATCATGTCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACTGTACTTGCAGAGGTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACTGTACTTGCAGAGGTTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.890 | 0.882 | search_plus_done; http://172.18.8.135:50400/match?q=CACTGTACTTGCAGAGGTTT&k=0&no_gap=0&offset=0&limit=50
1.418 | 0.527 | search_minus_done; http://172.18.8.135:50400/match?q=AAACCTCTGCAAGTACAGTG&k=0&no_gap=0&offset=0&limit=36
1.429 | 0.011 | cgi_end;

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