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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:06:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:37314074-37314094
AGATTCTACTGGATTCGGTGTGCTGTTTCC37314074CAGCATGTTCGGATTGATAGAGATGCTATTTTCATCAAATTTTCCAGGAAA
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:26604771-26604791
AGTTTCTACTGGATTCGAAGTGCTGTTTCC26604771CAGCATGTTCGGATTGATAGAGATGTTATTTTCATCAAATTTCCCAGGAAA
010812AASB003092HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB003092, mRNA sequence.
EB141136.1:344-364
TTTCCTGGAAAATTTGATGAAAGTAACATC344TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
TSA: Pyrus pyrifolia mRNA, contig: contig_8917.
FX398172.1:528-548
TTTCCTGGAAAATTTGATGACAATAACATC528TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT
TSA: Pyrus communis mRNA, contig: lc42762.
FX649764.1:2-22
C2TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT
TSA: Pyrus x bretschneideri Unigene2854_XinShao mRNA sequence.
JR598168.1:435-455
TTTCCTGGAAAATTTGATGACAATAACATT435TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT
TSA: Pyrus x bretschneideri Unigene7062_XinShao mRNA sequence.
JR602256.1:157-177
TTTCCTGGAAAATTTGATGACAATAACATT157TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT
Malus x domestica BHLH domain class transcription factor (BHLH21) mRNA, complete cds.
HM122457.1:771-791
TTTCCTGGAAAATTTGATGAAAGTAACATC771TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:3394340-3394360
TTTCCTGGAAAATTTGATGAAAATAACATC3394340TCTATCAATCCGAACATGCTGGGAAACAGCACACCAAATCCAGTAGAATCT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:3398117-3398137
TTTCCTGGAAAATTTGATGAAAGTAACATC3398117TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:3595226-3595246
TTTCCTGGAAAATTTGATGAAAATAACATC3595226TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:3783193-3783213
TTTCCTGGAAAATTTGATGAAAGTAACATC3783193TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:3601083-3601103
TTTCCTGGAAAATTTGATGAAAGTAACATC3601083TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:36340562-36340582
TTTCCTGGAAAATTTGATGAAAATAGCATC36340562TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:4124227-4124247
TTTCCTGGAAAATTTGATGAAAGTAACATC4124227TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:3616642-3616662
TTTCCTGGAAAATTTGATGAAAATAACATC3616642TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:3878174-3878194
TTTCCTGGAAAATTTGATGAAAGTAACATC3878174TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:3567011-3567031
TTTCCTGGAAAATTTGATGAAAATAACATC3567011TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:3602473-3602493
TTTCCTGGAAAATTTGATGAAAGTAACATC3602473TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus domestica genome assembly, chromosome: 13.
OU696689.1:3658294-3658314
TTTCCTGGAAAATTTGATGAAAATAACATC3658294TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:3897445-3897465
TTTCCTGGAAAATTTGATGAAAGTAACATC3897445TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus domestica genome assembly, chromosome: 13.
OU744554.1:3615081-3615101
TTTCCTGGAAAATTTGATGAAAATAACATC3615081TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Malus domestica genome assembly, chromosome: 16.
OU744557.1:3900457-3900477
TTTCCTGGAAAATTTGATGAAAGTAACATC3900457TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus domestica genome assembly, chromosome: 13.
OU744965.1:3595092-3595112
TTTCCTGGAAAATTTGATGAAAATAACATC3595092TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Malus domestica genome assembly, chromosome: 16.
OU744968.1:3865255-3865275
TTTCCTGGAAAATTTGATGAAAGTAACATC3865255TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus domestica genome assembly, chromosome: 13.
OU745003.1:3498309-3498329
TTTCCTGGAAAATTTGATGAAAATAACATC3498309TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Malus domestica genome assembly, chromosome: 16.
OU745006.1:3902165-3902185
TTTCCTGGAAAATTTGATGAAAGTAACATC3902165TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:4229977-4229997
TTTCCTGGAAAATTTGATGAAAGTAACATC4229977TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT
Malus x robusta genome assembly, chromosome: 9.
OY720333.1:3567972-3567992
TTTCCTGGAAAATTTGATGAAAATAACATC3567972TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:3804629-3804649
TTTCCTGGGCAGTTTGATGAAAATAACATC3804629TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAAACT
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:3846146-3846166
TTTCCTGGGAAGTTTGATGAAAATAACATC3846146TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAAACT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:3161365-3161385
TTTCCTGGAAAATTTGATGACAATAACATC3161365TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCATGTTCGGATTGATAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCATGTTCGGATTGATAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.316 | 0.307 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCATGTTCGGATTGATAGA&k=0&no_gap=0&offset=0&limit=50
0.489 | 0.173 | search_minus_done; http://172.18.8.135:50400/match?q=TCTATCAATCCGAACATGCTG&k=0&no_gap=0&offset=0&limit=48
0.509 | 0.019 | cgi_end;

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