GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-12 17:35:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Pipistrellus pygmaeus genome assembly, chromosome: 14.
OX465316.1:4459364-4459383
TCCTCCCCCCCGCAGCCATGGCCGAGCTCA4459364CATCCGGGTCTCTGACCCTCTGAAAGGCTCCTGCCGCCCTGTGGGTGCAA
Vespertilio murinus genome assembly, chromosome: 11.
OZ004715.1:4495625-4495644
GGGCCCCACCCACAGCCATGGCTGAGCTCA4495625CATCCGGGTCTCTGACCCTCCAAAAGGCTCCCGCCGCCCTGCGGGTGTAA
Lotus japonicus genomic DNA, chromosome 5, clone: LjB21O22, BM1451.
AP008090.2:91378-91397
ATTTCTGACTCATGAAGTCATGATCCCTTG91378CATCCGGGTCTCTGACCCTCCAAATTATAAAATATATATATATATATATA
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:64640563-64640582
ATTTCTGACTCATGAAGTCATGATCCCTTG64640563CATCCGGGTCTCTGACCCTCCAAATTATAAAATATATATATATATATATA
Chionographis japonica genome assembly, chromosome: 1.
OX393549.1:61891454-61891473
TCGGGTTGGAGATTACTTCTTTGAGCTCAC61891454CATCCGGGTCTCTGACCCTCTTCTCCGGGCTCCTCCTCTGCTTCGGTTCA
Arvicola amphibius genome assembly, chromosome: 8.
LR862388.1:108143605-108143624
ACCAAGTGTAACGTTTTATTGCCTTTTCCT108143605GAGGGTCAGAGACCCGGATGAGAATCCAACTCTTTACTGTCATAGGGGAA
Chionomys nivalis genome assembly, chromosome: 2.
OX465450.1:112963874-112963893
TATTGATCTTGAACCTTGATGCCTTTGCCT112963874GAGGGTCAGAGACCCGGATGAGAATCCAACTCTTTACTGTCACAAGGGAA
Pipistrellus pipistrellus genome assembly, chromosome: 14.
LR862370.1:49465777-49465796
TTGCACCCACAGGGCGGCAGGAGCCTTTCA49465777GAGGGTCAGAGACCCGGATGTGAGCTCGGCCATGGTTGCGGGGGTGAGGG
Lotus japonicus genomic DNA, chromosome 5, clone: LjT31L14, TM0366.
AP006667.1:89570-89589
TATATATATATATATATATTTTATAATTTG89570GAGGGTCAGAGACCCGGATGCAAGGGATCATGACTTCATGAGTCAGAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATCCGGGTCTCTGACCCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCCGGGTCTCTGACCCTC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.189 | 0.180 | search_plus_done; http://172.18.8.135:50400/match?q=CATCCGGGTCTCTGACCCTC&k=0&no_gap=0&offset=0&limit=50
0.301 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGGTCAGAGACCCGGATG&k=0&no_gap=0&offset=0&limit=45
0.303 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).