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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-06 06:08:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

CAH1-57C5TV CAA1Ba Cicer arietinum genomic clone CAH1-57C5, genomic survey sequence.
EI890058.1:37-56
TTGTTACGATCCAATTTAATCTTTTTGAGT37CCAATTCTTCGCAGTCCATCATTGGATGCAAAAGAAACCGCACAAACCAA
Trifolium repens isolate ACLI19 chromosome 05_Pall.
CP125845.1:33625986-33626005
TAGATCTCAGTCGAGCGGCAAAGGATGAAA33625986CCAATTCTTCGCAGTCCATCACCGGATGCAAAGGATGAAACCAAAAGGGT
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:64102452-64102471
TTGTTACGGTCCAATTTAATCTTTTTCAGT64102452CCAATTCTTCGCAGTCCATCACCGGATGCAAATGATGAAACCAAAAGTGT
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:56951505-56951524
TTGTTACGGTCCAATTTAATCTTTTTCAGT56951505CCAATTCTTCGCAGTCCATCACCGGATGCAAAGGATGAAACCAAAAGGGT
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:58839481-58839500
TTGTTTCGGTCCAATTTAATCTTCTTCAGT58839481CCAATTCTTCGCAGTCCATCACTGGATGCAAAAGATGAAACCAAGAGGCT
Trifolium dubium genome assembly, chromosome: 12.
OX638073.1:36219286-36219305
TTGTTTCGGTCCAATTTAATCTTCTTGAGT36219286CCAATTCTTCGCAGTCCATCACTGGATGCAAAGGATGAAACCAAAAGGCT
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:62178361-62178380
TTGTTACGGTCTAATTTGATCTTTTTGAGT62178361CCAATTCTTCGCAGTCCATCACTATCGGATGCAAAGGATGAAACCAAAAG
Cicer arietinum chromosome Ca7.
CP039337.1:919663-919682
TTGGTTTGTGCGGTTTCTTTTGCATCCAAT919663GATGGACTGCGAAGAATTGGACTCAAAAAGATTAAATTGGATCGTAACAA
Cicer arietinum chromosome Ca7.
CP040772.1:919679-919698
TTGGTTTGTGCGGTTTCTTTTGCATCCAAT919679GATGGACTGCGAAGAATTGGACTCAAAAAGATTAAATTGGATCGTAACAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAATTCTTCGCAGTCCATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAATTCTTCGCAGTCCATC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.380 | 0.372 | search_plus_done; http://172.18.8.135:50400/match?q=CCAATTCTTCGCAGTCCATC&k=0&no_gap=0&offset=0&limit=50
0.495 | 0.115 | search_minus_done; http://172.18.8.135:50400/match?q=GATGGACTGCGAAGAATTGG&k=0&no_gap=0&offset=0&limit=43
0.497 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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