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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 11:50:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:46015092-46015111
TGGTGGTAGTTCCCAAGTTCATTCTCAACT46015092CCACGTGATATTTGAGGGTAATGTTGAAAATATAATTTTTCATTTCTGTC
Brassica napus genome assembly, chromosome: A01.
HG994355.1:30591113-30591132
TGGTGGTAGTTCCCAAGTTCATTCTCAACT30591113CCACGTGATATTTGAGGGTAATGTTGAAAATATAATTTTTCATTTCAAGT
Brassica rapa genome, scaffold: A01.
LR031571.1:36571431-36571450
TGGTGGTAGTTCCCAAGTTCGTTCTCAACT36571431CCACGTGATATTTGAGGGTAATGTTGAAAATATAATTTTTCATTTCAAGT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:50166734-50166753
TGGTGGTAGTTCCCAAGTTCATTCTCAACT50166734CCACGTGATATTTGAGGGTAATGTTGAAAACATAATTTTTCATTTCAAGT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:1912175-1912194
ACTTGAAATGAAAAATTATATTTTCAACAT1912175TACCCTCAAATATCACGTGGAGTTGAGAATGAACTTGGGAACTACCACCA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:1006890-1006909
TTGAAAATGAAAATTTTATACTTACAACAT1006890TACCCTCAAATATCACGTGGAGTTGAGAATGAACTTGGGAACTATCACGG
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:37384199-37384218
ACTTGAAATGAAAAATTATATTTTCAACAT37384199TACCCTCAAATATCACGTGGAGTTGAGAACGAACTTGGGAACTACCACCA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:1006890-1006909
TTGAAAATGAAAATTTTATACTTACAACAT1006890TACCCTCAAATATCACGTGGAGTTGAGAATGAACTTGGGAACTATCACGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCACGTGATATTTGAGGGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACGTGATATTTGAGGGTA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.220 | 0.211 | search_plus_done; http://172.18.8.135:50400/match?q=CCACGTGATATTTGAGGGTA&k=0&no_gap=0&offset=0&limit=50
0.325 | 0.105 | search_minus_done; http://172.18.8.135:50400/match?q=TACCCTCAAATATCACGTGG&k=0&no_gap=0&offset=0&limit=46
0.328 | 0.003 | cgi_end;

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