GGGenome | Results

2025-04-08 22:55:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

UCRCS01_01aa10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.
CB290207.1:397-416

CCAGCTTCTATTCCACTGATTAGCGAGAAT397CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS01_02be08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be08, mRNA sequence.
CB291108.1:418-437

CCAGCTTCTATTCCACTGATTAGCGAAAAT418CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS01_04cd07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence.
CB292488.1:226-245

CCAGCTTCTATTCCACTGATTAGCGAGAAT226CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS01_05ac07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ac07, mRNA sequence.
CB292794.1:314-333

CCAGCTTCTATTCCACTGATTAGCGAGAAT314CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCR01_01C19_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C19, mRNA sequence.
CF828171.1:382-401

CCAGCTTCTATTCCACTGATTAGCGAGAAT382CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCR01_01C20_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C20, mRNA sequence.
CF828173.1:382-401

CCAGCTTCTATTCCACTGATTAGCGAGAAT382CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCR01_01E19_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01E19, mRNA sequence.
CF828248.1:382-401

CCATCTTCTATTCCACTGATTATCGAGAAT382CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCR01_03H23_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa03H23, mRNA sequence.
CF829642.1:395-414

CCAGCTTCTATTCCACTGATTAGCGAGAAT395CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCR01_05N10_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05N10, mRNA sequence.
CF831126.1:304-323

CCAGCTTCTATTCCACTGATTAGCGAGAAT304CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS02_03A21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A21, mRNA sequence.
CF833118.1:419-438

CCAGCTTCTATTCCACTGATTAGCGAGAAT419CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS04_0001A12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A12, mRNA sequence.
CN181493.1:353-372

CCAGCTTCTATTCCACTGATTAGCGAGAAT353CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS04_0001H12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H12, mRNA sequence.
CN181779.1:417-436

CCAGCTTCTATTCCACTGATTAGCGAGAAT417CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS04_0002G19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G19, mRNA sequence.
CN182417.1:419-438

CCAGCTTCTATTCCACTGATTAGCGAGAAT419CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS06_0002E03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E03, mRNA sequence.
CN189681.1:419-438

CCAGCTTCTATTCCACTGATTAACGAGAAT419CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRPT01_0013C10_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0013C10, mRNA sequence.
CV709624.1:390-409

CCAGCTTCTATTCCACTGATTAGCGAGAAT390CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS08_0004O23_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0004O23, mRNA sequence.
CV714871.1:302-321

CCAGCTTCTATTCCACTGATTAGCGAGAAT302CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS04_2_012D12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D12, mRNA sequence.
CV885078.1:302-321

CCAGCTTCTATTCCACTGATTAGCGAGAAT302CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS04_2_022A06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_022_T7_A06, mRNA sequence.
CV886259.1:383-402

CCAGCTTCTATTCCACTGATTAGCGAGAAT383CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRPT02_59E09_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-59E09-I18-1-6.b, mRNA sequence.
CX642329.1:314-333

CCAGCTTCTATTCCACTGATTAGCGAGAAT314CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCP01_030_H10_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_030_T7_H10, mRNA sequence.
CX667393.1:406-425

CCAGCTTCTATTCCACTGATTAGCGAGAAT406CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS11_05A15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005A15, mRNA sequence.
DN620240.1:531-550

GTTGTTCGAGTAGAGAAATTGTCAACATAC531CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCS11_06I15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I15, mRNA sequence.
DN621308.1:339-358

CCAGCTTCTATTCCACTGATTAGCGAGAAT339CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

UCRCA01_04J15_f Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0004J15, mRNA sequence.
DN624164.1:426-445

CCAGCTTCTATTCCACTGATTAGCGAGAAT426CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

CP-20_H10_089.f1 Citrus paradisi young grapefruit leaf cDNA library Citrus x paradisi cDNA clone CP-20_H10_089 3', mRNA sequence.
EB685053.1:415-434

CCAGCTTCTATTCCACTGATTAGCGAGAAT415CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

CP49_F03_027.f1 Citrus paradisi young grapefruit leaf cDNA library Citrus x paradisi cDNA clone CP49_F03_027 3', mRNA sequence.
EB687477.1:408-427

CCAGCTTCTATTCCACTGATTAGCGAGAAT408CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG

Ailanthus altissima genome assembly, chromosome: 2.
OX327684.1:31970711-31970730

ATTCACAATTAGACAAAATTGTCAGCATAC31970711CCAGTAATCCTCGCCATCATCACTAGTCCCCCAACCAATGAGCTTAACAG

USDA-FP_00453 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00453 5', mRNA sequence.
BQ623362.1:483-502

CTGTTAAGCTTATTGGTTGGGGAACTAGTG483ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

USDA-FP_121000-741 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-40_G12 5', mRNA sequence.
CF506243.1:278-297

CTGTTAAGCTTATTGGTTGGGGAACTAGTG278ATGATGGCGAGGATTACTGGATTCTCGCTAATCA

UCRCR01_01C19_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C19, mRNA sequence.
CF828170.1:643-662

CTGTTAAGCTTATTGGTTGGGGAACTAGTG643ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

UCRCR01_01C20_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C20, mRNA sequence.
CF828172.1:644-663

CTGTTAAGCTTATTGGTTGGGGAACTAGTG644ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

USDA-FP_3953 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE19C12 5', mRNA sequence.
CK665478.1:174-193

CTGTTAAGCTTATTGGTTGGGGAACTAGTG174ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

USDA-FP_6596 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E01 5', mRNA sequence.
CK740102.1:122-141

CTGTTAAGCTTATTGGTTGGGGAACTAGTG122ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

CGF1004438_E07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_E07 5', mRNA sequence.
CK938768.1:651-670

CTGTTAAGCTTATTGGTTGGGGAACTAGTG651ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

C02014G03SK IF1 Citrus clementina cDNA clone C02014G03, mRNA sequence.
CX289566.1:363-382

CTGTTAAGCTTATTGGTTGGGGAACTAGTG363ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

C06021C10SK FlavCurFr1 Citrus clementina x Citrus tangerina cDNA clone C06021C10, mRNA sequence.
CX299328.1:362-381

CTGTTAAGCTTATTGGTTGGGGAACTAGTG362ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

UCRPT02_59E09_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-59E09-I18-1-5.g, mRNA sequence.
CX642330.1:573-592

CTGTTAAGCTTATTGGTTGGGGAACTAGTG573ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

UCRCP01_030_H10_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_030_T3_H10, mRNA sequence.
CX667392.1:723-742

CTGTTAAGCTTATTGGTTGGGGAACTAGTG723ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

Citrus unshiu mRNA, clone: STG2_0787, 5'-end sequence, expressed in style.
DC899561.1:190-209

CTGTTAAGCTTATTGGTTGGGGAACTAGTG190ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

USDA-FP/ARO_13123 Star Ruby grapefruit temperature-conditioned flavedo cDNA Citrus x paradisi cDNA clone Cond-33_C11 5', mRNA sequence.
DN798255.1:638-657

CTGTTAAGCTTATTGGTTGGGGAACTAGTG638ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

USDA-FP/ARO_15448 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-26_E04 5', mRNA sequence.
DN959618.1:412-431

CTGTTAAGCTTATTGGTTGGGGAACTAGTG412ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

USDA-FP/ARO_15687 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-30_D06 5', mRNA sequence.
DN959857.1:329-348

CTGTTAAGCTTATTGGTTGGGGAACTAGTG329ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

Volcani_7_09_G6 Volcani07 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX447549.1:632-651

CTGTTAAGCTTATTGGTTGGGGAACTAGTG632ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

CS00-C1-101-022-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY660466.1:101-120

CTGTTAAGCTTATTGGTTGGGGAACTAGTG101ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

CS00-C1-101-024-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY660680.1:115-134

CTGTTAAGCTTATTGGTTGGGGAACTAGTG115ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

CS00-C3-701-023-C03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY703652.1:874-893

GCTNGTAAGCTNATGGNTGGGGAACTANTG874ATGATGGCGAGGATTACTGGGATCCTCCTATANTGGAATNAAACTGGGTG

CS00-C3-701-031-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704337.1:369-388

CTGTTAAGCTTATTGGTTGGGGAACTAGTG369ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

CS00-C3-702-038-E07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY714105.1:548-567

CTGTTAAGCTTATTGGTTGGGGAACTAGTG548ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

CR05-C1-103-053-C12-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY779598.1:524-543

CTGTTAAGCTTATTGGTTGGGGAACTAGTG524ATGATGGCGAGGATTACTGGATCCTCGCTAATCATGGGAATAGAAGCTGG

PT11-C1-901-028-E05-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY821281.1:492-511

CTGTTAAGCTTATTGGTTGGGGAACTAGTG492ATGATGGCGAGGATTACTGGATTCTCGCTAGTCAATGGAATAAAAACTGG

PT11-C2-301-020-E03-CT.F Poncirus trifoliata bark, infected with Phytophthora parasitica Citrus trifoliata cDNA, mRNA sequence.
EY835206.1:57-76

CTGTTAAGCTTATTGGTTGGGGAACTAGTG57ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG

Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:21651315-21651334

CTGTTAAGCTTATTGGTTGGGGAACTAGTG21651315ATGATGGCGAGGATTACTGGGTATGTTGACAATTTCTCTACTCGAACAAC

Sepia lycidas genome assembly, chromosome: 6.
OZ010576.1:41738062-41738081

ATGTAGGAGGAAAATTAAGTCATGTCTTGA41738062ATGATGGCGAGGATTACTGGCCAAAAATATAAATTATTGTTACGTTGTAA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.808 | 0.799 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGTAATCCTCGCCATCAT&k=0&no_gap=0&offset=0&limit=50
1.921 | 1.113 | search_minus_done; http://172.18.8.135:50400/match?q=ATGATGGCGAGGATTACTGG&k=0&no_gap=0&offset=0&limit=24
1.938 | 0.017 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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