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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 16:24:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Populus nigra mRNA, clone: PnFL2-067_G12, 5'end.
DB886675.1:300-318
CTATCTCAGATCTGCAGGCTCAAACCTGTT300CCAGTTTTTCGTTGTGGCAAATCTGAGGACACTTTTAGAGCATTTTATT
Miltochrista miniata genome assembly, chromosome: 3.
OW121750.1:19616656-19616674
AAAAAGACTTAATGTCGTTTTCCCGAAATT19616656CCAGTTTTTCGTTGTGGCACGTTGTAGTTTTAAATGAGCGAATTATGTT
Miltochrista miniata genome assembly, chromosome: 7.
OW121754.1:5870861-5870879
AAAAAGTCTCAATGTCGTTTTCCCAAAATT5870861CCAGTTTTTCGTTGTGGCACGTTGTAGTTTTAAATGAGCGATATAATAC
Miltochrista miniata genome assembly, chromosome: 29.
OW121776.1:15457050-15457068
AAAAAGTCTCAATGTCGTTTTCCCAAAATT15457050CCAGTTTTTCGTTGTGGCACGTTGTAGTTTTAAATGAGCGATGTTATCT
Populus nigra genome assembly, chromosome: 15.
OX637686.1:4884707-4884725
AATAAAATGCTCTAAAAGTGTCCTCAGATT4884707TGCCACAACGAAAAACTGGAACCGGTTTGAGCCTGCAGATCTGAGATAG
Miltochrista miniata genome assembly, chromosome: 11.
OW121758.1:12216895-12216913
TGTGTACATCGCTCATTTAAAACTACAACG12216895TGCCACAACGAAAAACTGGAATTTTGGGAAAACGACATTGAGACTTTTT
Sarcophaga carnaria genome assembly, chromosome: 1.
OY283149.1:98274814-98274832
AAGGTCAATTAATGTTAATGCCGTGTTAAG98274814TGCCACAACGAAAAACTGGATTTTTTAAATCGATTTAATTAACTTGTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAGTTTTTCGTTGTGGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGTTTTTCGTTGTGGCA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.217 | 0.208 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGTTTTTCGTTGTGGCA&k=0&no_gap=0&offset=0&limit=50
0.327 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=TGCCACAACGAAAAACTGG&k=0&no_gap=0&offset=0&limit=46
0.329 | 0.002 | cgi_end;

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