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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-08 15:19:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Anas platyrhynchos genome assembly, chromosome: 22.
LS423632.1:2637530-2637549
CTGGAGCGATGAGGTAGGCCAGTCCTACAT2637530CCATGGAGGCAGAAATCGAGCGATGAGGTAGGCCAGTCCTATGTCTGTGG
Lotus japonicus genomic DNA, chromosome 1, clone: LjT47J05, TM0295.
AP007314.2:7543-7562
CAACTCATTTTTTTTAATTCCAACTCACGA7543CCATGGAGGCAGAAATCGAGCGGTTGCGTGACGGCGAGGCGGAGATGTGG
Lotus japonicus genomic DNA, clone: LjB20E08, BM2151.
AP010877.1:66198-66217
CCACATCTCCGCCTCGCCGTCACGCAACCG66198CTCGATTTCTGCCTCCATGGTCGTGAGTTGGAATTAAAAAAAATGAGTTG
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:127720068-127720087
CCACATCTCCGCCTCGCCGTCACGCAACCG127720068CTCGATTTCTGCCTCCATGGTCGTGAGTTGGAATTAAAAAAAATGAGTTG
Triticum timopheevii genome assembly, chromosome: 3G.
OY997266.1:190932651-190932670
TAGCGCCGTTAACTCCTTGGTCGCGAGGGC190932651CTCGATTTCTGCCTCCATGGCCGACGTTGTTGTTTTGTCCTCTGCTTTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATGGAGGCAGAAATCGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATGGAGGCAGAAATCGAG | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.377 | 0.369 | search_plus_done; http://172.18.8.135:50400/match?q=CCATGGAGGCAGAAATCGAG&k=0&no_gap=0&offset=0&limit=50
0.476 | 0.099 | search_minus_done; http://172.18.8.135:50400/match?q=CTCGATTTCTGCCTCCATGG&k=0&no_gap=0&offset=0&limit=48
0.478 | 0.002 | cgi_end;

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