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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:36:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a002O24_SP6.
AM057057.1:102-121
TGTATTCGAGATCAAATAACTTAACAATCT102CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a013J08_SP6.
AM386929.1:71-90
TGTATTCGAGATCAAATAACTTAACAATCT71CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
EL3937R Brassica embryo library (EL) Brassica napus cDNA clone EL3937 5', mRNA sequence.
CN830105.1:93-112
TGTATTCGAGATCAAATAACTTAACAATCT93CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
KBrAE005L09c A leaf cDNA library of Chinese Cabbage, Brassica rapa Brassica rapa subsp. pekinensis cDNA clone KBrAE005L09, mRNA sequence.
CO750279.1:20-39
TCAAATAACTTAACAATCT20CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC
20-E011255-021-008-H05-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022H058Q, mRNA sequence.
CX194543.1:62-81
AGGTTGCGGGATCAAATAACTTAACAATCT62CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
64ETCOT5_T3_015_C03_30JAN2005_027 Brassica napus mature seed Normalized library at CoT 5 Brassica napus cDNA 5', mRNA sequence.
EE438409.1:43-62
GTAGTTCGAGATCAAATAACTTAACAATCT43CCCAACACAGAACACAAGACGCCCGAAAGAAAAGCAAACTGGTAGACAAT
BNHA_T7_007_D06_06JUN2003_021 Brassica napus - BNHA Brassica napus cDNA 5', mRNA sequence.
EE548411.1:113-132
TGTATTCGAGATCAAATAACTTAACAATCT113CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
BNQA_RP_003_H11_28AUG2003_081 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE548724.1:79-98
TGTATTCGAGATCAAATAACTTAACAATCT79CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
OL7617F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7617, mRNA sequence.
EH426417.1:32-51
TGTATTCGAGATCAAATAACTTAACAATCT32CCCAACACAGAACACAAGACGCAAGAGAGAGAAGCAAACTGGTAGACAAT
OL9151F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9151, mRNA sequence.
EH429491.1:26-45
TCGAGATCAAATAATTTAACAATCT26CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
OL9228F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9228, mRNA sequence.
EH429608.1:28-47
ATTCGAGATCAAATCACTTAACAATCT28CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
65JKBNM0_T3_005_F10_16MAR2005_070 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587108.1:42-61
TGTATTCGAGATCAAATAACTTAACAATCT42CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
65JKBNMO_UP_049_E02_17JUL2006_008 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL590825.1:41-60
TGTATTCCAGATCAAATAACTTAACAATCT41CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
65JKBNMO_UP_058_G02_17JUL2006_004 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591557.1:51-70
TGTATTCGAGATCAAATAACTTAACAATCT51CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0187401 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV091158.1:154-173
GGTATTCGAGATCAAATAACTTAACAATCT154CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0190831 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093136.1:166-185
TGTATTCGAGATCAAATAACTTAACAATCT166CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0193891 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV095890.1:34-53
CGTGGTTCACAGACAAAAACTTAACAATCT34CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0180649 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV100237.1:155-174
TGTATTCGAGATCAAATAACTTAACAATCT155CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0126080 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV120768.1:62-81
TGTATTCGAGATCAAATAACTTAACAATCT62CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0127018 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV121706.1:84-103
TGTATTCGAGATCAAATAACTTAACAATCT84CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0129427 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV124115.1:78-97
TGTATTCGAGATCAAATAACTTAACAATCT78CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0129483 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV124171.1:77-96
TGTATTCGAGATCAAATAACTTAACAATCT77CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0198341 Brassica napus Stem library Brassica napus cDNA, mRNA sequence.
EV128833.1:29-48
CGTTGATTCAGATCAATACTTACAATCT29CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0170222 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV135096.1:71-90
TGTATTCGAGATCAAATAACTTAACAATCT71CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0077274 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV153414.1:119-138
TGAACTCGAGATCAAATAACTTAACAATCT119CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0077356 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV153496.1:125-144
TGTATTCGAGATCAAATAACTTAACAATCT125CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0080531 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156669.1:97-116
TGTATTCGAGATCAAATAACTTAACAATCT97CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0080852 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156990.1:137-156
TGTATTCGAGATCAAATAACTTAACAATCT137CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0081060 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV157198.1:78-97
TGTATTCGAGATCAAATAACTTAACAATCT78CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0146552 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV168838.1:128-147
TGCCTCGGACAGCAAGTACCTTAACAATCT128CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0150477 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV179669.1:65-84
TGTATTCGAGATCAAATAACTTAACAATCT65CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
0086862 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV189381.1:61-80
TTGTATTCGAGATCAATAACTTAACAATCT61CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0134534 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV219426.1:30-49
CGTAGATTCGAGATCAATACTTAACATCT30CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
BR068812 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-01G12 5', mRNA sequence.
EX084168.1:29-48
TATTCGAGATCAAATAACTTAACAATCT29CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC
BR069999 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-20A07 5', mRNA sequence.
EX085355.1:31-50
TGTATTCGAGATCAAATAACTTAACAATCT31CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC
BR124461 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-31C01 5', mRNA sequence.
EX140631.1:169-188
TGTATTCGAGATCAAATAACTTAACAATCT169CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC
BR125674 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-48F02 5', mRNA sequence.
EX141844.1:46-65
TGTATTCGAGATCAAATAACTTAACAATCT46CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC
1106121094143 Cryptosporidium muris (strain RN66) cDNA library, stage oocyst Cryptosporidium muris RN66 cDNA clone 1061038769506, mRNA sequence.
FD389073.1:36-55
TTTGTTTCGAGATCAATAACTTAACAATCT36CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF05L14, 3'-end sequence.
FY070022.1:16-35
ATAACTTAACAATCT16CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF08N22, 3'-end sequence.
FY071130.1:17-36
AATAACTTAACAATCT17CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF43J07, 3'-end sequence.
FY427560.1:15-34
TAACTTAACAATCT15CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
0247470 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO931404.1:42-61
TGGTATTCGAGATCAAGAACTTAACTATCT42CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC
0273762 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO937977.1:37-56
GGTGTGTCGAGATCAATAATTAATCATCTG37CCCAACACAGAACACAAGACGCTGATAGAAAAAAAGCAAACTGGTAGACA
0243855 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO943062.1:209-228
TGTATTCGAGATCAAATAACTTAACAATCT209CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC
odf64e06.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH939482.1:347-366
TGTATTCGAGATCAAATAACTTAACAATCT347CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGCAGACAAT
KBrH094D05R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH094D05, genomic survey sequence.
DU120331.1:821-840
TGTATTCGAGATCAAATAACTTAACAATCT821CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC
BOT01-74D3TF BOT01 Brassica oleracea genomic clone BOT01-74D3, genomic survey sequence.
FI729695.1:103-122
TGTATTCGAGATCAAATAACTTAACAATCT103CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGCAGACAAT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:18419909-18419928
TGTATTCGAGATCAAATAACTTAACAATCT18419909CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:18343948-18343967
TGTATTCGAGATCAAATAACTTAACAATCT18343948CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:29034537-29034556
TGTATTCGAGATCAAATAACTTAACAATCT29034537CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
Brassica rapa genome, scaffold: A03.
LR031572.1:18050345-18050364
TGTATTCGAGATCAAATAACTTAACAATCT18050345CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:29009116-29009135
TGTATTCGAGATCAAATAACTTAACAATCT29009116CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT
Digitaria exilis genome assembly, chromosome: 4A.
LR994610.1:8658877-8658896
ACGCTCACAATTCACATGCATCACATACTA8658877CCCAACACAGAACACAAGACCCTTACAAACGTGCATGGATGTCTTAAACC
Digitaria exilis genome assembly, chromosome: 4B.
LR994611.1:8470775-8470794
ACGCTCACAATTCACATGCATCACATACTA8470775CCCAACACAGAACACAAGACCCTTACAAACGTGCATGGATGTCTTAAACC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:18177208-18177227
TGTATTCGAGATCAAATAACTTAACAATCT18177208CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCAACACAGAACACAAGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCAACACAGAACACAAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.274 | 3.265 | search_plus_done; http://172.18.8.135:50400/match?q=CCCAACACAGAACACAAGAC&k=0&no_gap=0&offset=0&limit=50
3.402 | 0.128 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTTGTGTTCTGTGTTGGG&k=0&no_gap=0&offset=0&limit=0
3.402 | 0.000 | cgi_end;

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