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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 10:58:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

SS2127.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS2127.txt 5', mRNA sequence.
CV546065.1:168-187
AGTGACGTCACGGTTGCCTCTGCGACGAAA168CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG
BR044420 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-063F08 5', mRNA sequence.
EX059776.1:94-113
AGCGACGTCACGGTTGCCTCTGCGACGAAA94CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG
BR078590 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-102H11 5', mRNA sequence.
EX092300.1:177-196
AGCGACGTCACGGTTGCCTCTGCGACGAAA177CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG
Pyrrhosoma nymphula genome assembly, chromosome: 5.
OY754331.1:116343283-116343302
TCATTCATTACCTCTGATGGCATGGACTGT116343283CCGCCTCAATCTCTAGCTTTGGCTCCAGCTATATCAGATGCTCAGTATAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_10848.
FX701962.1:1090-1109
CCTCCAACAACGGAAGGAGTGTGAACCACT1090AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8819.
FX736720.1:998-1017
CCTCCAACAACGGAAGGAGTGTGAACCACT998AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:9674700-9674719
CCTCCAACAACGGAAGGAGTGTGAACCACT9674700AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGCCTCAATCTCTAGCTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGCCTCAATCTCTAGCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.280 | 0.272 | search_plus_done; http://172.18.8.135:50400/match?q=CCGCCTCAATCTCTAGCTTT&k=0&no_gap=0&offset=0&limit=50
0.518 | 0.238 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGCTAGAGATTGAGGCGG&k=0&no_gap=0&offset=0&limit=46
0.520 | 0.002 | cgi_end;

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