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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 20:59:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_13131.
FX660884.1:1199-1218
GAGGAGGAATCTATACCGCTAATGGGCCGT1199CCGTAATCGTCGAACAAGGTCGAATTCGATGATTTAGGAGCTGTCCCACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7567.
FX695310.1:1231-1250
GAGGAGGAATCAGAGACGCTGATGGGGCGT1231CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2288.
FX728566.1:1198-1217
GAGGAGGAATCAGAGACGCTGATGGGGCGT1198CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG
TSA: Raphanus sativus RS14864 mRNA sequence.
JT799411.1:1195-1214
GAGGAGGAATCTATACCGCTAATGGGCCGT1195CCGTAATCGTCGAACAAGGTCGAATTCGATGATTTAGGAGCTGTCCCACG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042N05, complete sequence.
AC189346.2:80803-80822
GAGGAGGAATCAGAGACGCTGATGGGGCGT80803CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058M10, complete sequence.
AC189405.2:43860-43879
GAGGAGGAATCAGAGACGCTGATGGGGCGT43860CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:20443797-20443816
GAGGAGGAATCAGAGACGCTGATGGGCCGT20443797CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG
Brassica napus genome assembly, chromosome: A08.
HG994362.1:22951899-22951918
GAGGAGGAATCAGAGACGCTGATGGGGCGT22951899CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG
Brassica rapa genome, scaffold: A08.
LR031575.1:21798565-21798584
GAGGAGGAATCAGAGACGCTGATGGGGCGT21798565CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:25215135-25215154
GAGGAGGAATCTATACCGCTAATGGGCCGT25215135CCGTAATCGTCGAACAAGGTCGAATTCGATGATTTAGGAGCTGTCCCACG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:27584785-27584804
GAGGAGGAATCAGAGACGCTGATGGGGCGT27584785CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a002L05_SP6.
AM056999.1:260-279
CGTGGAACAGCGCCCAAATCATCGAACTCG260ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC
Brassica oleracea var. viridis mRNA, clone: KALE-019E15, 5' end sequence.
DK462926.1:635-654
CGTGGAACAGCGCCCAAATCATCGAACTCG635ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC
Brassica oleracea var. viridis mRNA, clone: KALE-068M24, 5' end sequence.
DK481853.1:715-734
CGTGGGACAGCGCCCAAATCATCGAACTCG715ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC
Brassica oleracea var. viridis mRNA, clone: KALE-136A14, 5' end sequence.
DK507574.1:742-761
CGTGAAACAGCGCCCAAATCATCGAACTCG742ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC
59ACAB6_UP_014_G12_26JUL2004_084 Brassica napus 59ACAB6 Brassica napus cDNA 5', mRNA sequence.
EE420763.1:719-738
CGTGGAACAGCGCCCAAATCATCGAACTCG719ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATT
36RDBRG_UP_025_C12_11JUN2004_092 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE518252.1:681-700
CGTGGAACAGCGCCCAAATCATCGAACTCG681ACCTTGTTCGACGATTACGGACGGCCCATCA
BNARO4GH_T3_008_H03_24NOV2006_017 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES903107.1:722-741
CGTGGAACAGCGCCCAAATCATCGAACTCG722ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC
BNARO4GH_T3_020_B07_24NOV2006_061 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES904532.1:676-695
CGTGGAACAGCGCCCAAATCATCGAACTCG676ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
0118764 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113452.1:755-774
CGTGGAACAGCGCCCAAATCATCGAACTCG755ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTTCCTCCT
0121923 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116611.1:752-771
CGTGGAACAGCGCCCAAATCATCGAACTCG752ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC
0121966 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116654.1:728-747
CGTGGAACAGCGCCCAAATCATCGAACTCG728ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
0089354 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV191873.1:225-244
CGTGGAACAGCGCCCAAATCATCGAACTCG225ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
0097747 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV196594.1:656-675
CGTGGAACAGCGCCCAAATCATCGAACTCG656ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
RS3B139TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW734564.1:48-67
CGTGGGACAGCTCCTAAATCATCGAATTCC48ACCTTGTTCGACGATTACGGACGACCCATCAGCGGTGTTGATTCCTCCTC
BR008663 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-001H06 5', mRNA sequence.
EX024019.1:321-340
CGTGGAACAGCGCCCAAATCATCGAACTCG321ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR011005 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-033A09 5', mRNA sequence.
EX026361.1:320-339
CGTGGAACAGCGCCCAAATCATCGAACTCG320ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR018454 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-146F02 5', mRNA sequence.
EX033810.1:259-278
CGTGGAACAGCGCCCAAATCATCGAACTCG259ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR018625 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-149F10 5', mRNA sequence.
EX033981.1:275-294
CGTGGAACAGCGCCCAAATCATCGAACTCG275ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR018767 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-151F06 5', mRNA sequence.
EX034123.1:306-325
CGTGGAACAGCGCCCAAATCATCGAACTCG306ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR018844 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-152G07 5', mRNA sequence.
EX034200.1:321-340
CGTGGAACAGCGCCCAAATCATCGAACTCG321ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR019637 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-164F11 5', mRNA sequence.
EX034993.1:320-339
CGTGGAACAGCGCCCAAATCATCGAACTCG320ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR022826 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-042C10 5', mRNA sequence.
EX038182.1:102-121
CGTGGAACAGCGCCCAAATCATCGAACTCG102ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR022854 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-042F06 5', mRNA sequence.
EX038210.1:56-75
CGTGGAACAGCGCCCAAATCATCGAACTCG56ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
BR034667 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-054C09 5', mRNA sequence.
EX050023.1:116-135
CGTGGAACAGCGCCCAAATCATCGAACTCG116ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
RR3DS23TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY915261.1:48-67
CGTGGGACAGCTCCTAAATCATCGAATTCC48ACCTTGTTCGACGATTACGGACGACCCATCAGCGGTGTTGATTCCTCCTC
BN18DYSC_UP_030_F08_18FEB2008_054 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG555516.1:618-637
CGTGGAACAGCGCCCAAATCATCGAACTCG618ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
Raphanus sativus mRNA, clone: RSCS03F06, 5' end sequence.
FY446997.1:523-542
CGTGGAACAGCGCCTAAATCATCGAATTCC523ACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTC
Raphanus sativus mRNA, clone: RSCS09O21, 5' end sequence.
FY449273.1:790-809
CGTGGAACAGCGCCTAAATCATCGAATTCC790ACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_5353.
FX738162.1:861-880
CGTGGGACAGCTCCTAAATCATCGAATTCG861ACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTC
Brassica rapa subsp. pekinensis clone KBrB032F05, complete sequence.
FP102466.1:144425-144444
CGTGGAACAGCGCCCAAATCATCGAACTCG144425ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:3309556-3309575
CGTGGAACAGCGCCCAAATCATCGAACTCG3309556ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:21310462-21310481
CGTGGAACAGCGCCCAAATCATCGAACTCG21310462ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:30460933-30460952
CGTGGAACAGCGCCCAAATCATCGAACTCG30460933ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:3679147-3679166
CGTGGGACAGCTCCTAAATCATCGAATTCG3679147ACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGTAATCGTCGAACAAGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTAATCGTCGAACAAGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.219 | 0.210 | search_plus_done; http://172.18.8.135:50400/match?q=CCGTAATCGTCGAACAAGGT&k=0&no_gap=0&offset=0&limit=50
2.360 | 2.141 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTTGTTCGACGATTACGG&k=0&no_gap=0&offset=0&limit=39
2.382 | 0.023 | cgi_end;

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