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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-12-16 17:25:51, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9190.
FX717221.1:116-139
CTCGAGATTACTTGCGTTTCTCTTACATGA116CCGTGCAGACACATTTGTTCATCTTAGGATCATCTCCTTTAGGCTTCTTTTCTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_36544.
FX767848.1:201-224
CTCGAGATTACTTGCGTTTCTCTTACATGA201CCGTGCAGACACATTTGTTCATCTTAGGATCATCTCCTTTAGGCTTCTTTTCTT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:15212260-15212283
CTCGAGATTACTTGCGTTTCTCTTACATGA15212260CCGTGCAGACACATTTGTTCATCTTAGGATCATCTCCTTTAGGCTTCTTTTCTG
Brassica napus cultivar Xiang5A chromosome 3.
CP151898.1:15212303-15212326
CTCGAGATTACTTGCGTTTCTCTTACATGA15212303CCGTGCAGACACATTTGTTCATCTTAGGATCATCTCCTTTAGGCTTCTTTTCTG
Brassica napus cultivar Xiang5A chromosome 13.
CP151908.1:23658371-23658394
CTCGAGATTACTTGCGTTTCTCTTACATGA23658371CCGTGCAGACACATTTGTTCATCTTAGGATCATCACCTTTAGGCTTCTTTTCTG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:15094277-15094300
CTCGAGATTACTTGCGTTTCTCTTACATGA15094277CCGTGCAGACACATTTGTTCATCTTAGGATCATCACCTTTAGGCTTCTTTTCTG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:23641363-23641386
CTCGAGATTACTTGCGTTTCTCTTACATGA23641363CCGTGCAGACACATTTGTTCATCTTAGGATCATCACCTTTAGGCTTCTTTTCTG
Brassica rapa genome, scaffold: A03.
LR031572.1:14843643-14843666
CTCGAGATTACTTGCGTTTCTCTTACATGA14843643CCGTGCAGACACATTTGTTCATCTTAGGATCATCACCTTTAGGCTTCTTTTCTG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:23374935-23374958
CTCGAGATTACTTGCGTTTCTGTTACATGA23374935CCGTGCAGACACATTTGTTCATCTTAGGATCATCACCTTTAGGCTTCTTTTCTG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:14969784-14969807
CTCGAGATTACTTGCGTTTCTCTTACATGA14969784CCGTGCAGACACATTTGTTCATCTTAGGATCATCACCTTTAGGCTTCTTTTCTG
53COT2_T3_010_E09_03SEP2004_071 Brassica napus 36hr germinating seed library 53COT2 Brassica napus cDNA 5', mRNA sequence.
DY024944.1:364-387
AAGAAAAGAAGCCTAAAGGTGATGATCCTA364AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BNQA_UP_074_G09_31MAY2005_067 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE552486.1:390-413
AAGAAAAGAAGCCTAAAGGTGATGATCCTA390AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTGATCTCGAG
BNSCS4CT_UP_179_D07_22MAY2007_057 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV072221.1:470-493
AAGAAAAGAAGCCTAAAGGTGATGATCCTA470AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BR033957 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-045B01 5', mRNA sequence.
EX049313.1:468-491
AAGAAAAGAAGCCTAAAGGAGATGATCCTA468AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BR034590 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-053C09 5', mRNA sequence.
EX049946.1:468-491
AAGAAAAGAAGCCTAAAGGAGATGATCCTA468AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BR071248 pistil cDNA library KCOW Brassica rapa subsp. pekinensis cDNA clone KCOW-08C04 5', mRNA sequence.
EX116549.1:618-641
AAGAAAAGAAGCCTAAAGGAGATGATCCTA618AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BR102396 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-15E03 5', mRNA sequence.
EX118566.1:339-362
AAGAAAAGAAGCCTAAAGGAGATGATCCTA339AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BR106719 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-14B10 5', mRNA sequence.
EX122889.1:358-381
AAGAAAAGAAGCCTAAAGGAGATGATCCTA358AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BR107695 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-29D06 5', mRNA sequence.
EX123865.1:537-560
AAGAAAAGAAGCCTAAAGGAGATGATCCTA537AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BR108005 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-34B01 5', mRNA sequence.
EX124175.1:537-560
AAGAAAAGAAGCCTAAAGGAGATGATCCTA537AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BR109363 etiolated mature leaf cDNA library KHLW Brassica rapa subsp. pekinensis cDNA clone KHLW-01G12 5', mRNA sequence.
EX125533.1:536-559
AAGAAAAGAAGCCTAAAGGAGATGATCCTA536AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
BN24DYSC_UP_003_A03_8JAN2008_031 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG571072.1:117-140
AAGAAAAGAAGCCTAAAGGTGATGATCCTA117AGATGAACAAATGTGTCTGCACGGTCATGTAGGAGAAACGCAAGTAATCTCGAG
BNAPO1GH_T3_007_F05_14JUN2007_037 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR450746.1:440-463
AAGAAAAGAAGCCTAAAGGTGATGATCCTA440AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH065D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC241143.1:112914-112937
CAGAAAAGAAGCCTAAAGGAGATGATCCTA112914AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:55545892-55545915
CAGAAAAGAAGCCTAAAGGTGATGATCCTA55545892AGATGAACAAATGTGTCTGCACGGTCATGTAAGAGAAACGCAAGTAATCTCGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGTGCAGACACATTTGTTCATCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTGCAGACACATTTGTTCATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.392 | 0.383 | search_plus_done; http://172.18.8.135:50800/match?q=CCGTGCAGACACATTTGTTCATCT&k=0&no_gap=0&offset=0&limit=50
1.377 | 0.985 | search_minus_done; http://172.18.8.135:50800/match?q=AGATGAACAAATGTGTCTGCACGG&k=0&no_gap=0&offset=0&limit=40
1.387 | 0.010 | cgi_end;

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