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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:28:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Squalius cephalus genome assembly, chromosome: 17.
OX439263.1:678409-678428
AACACACACGGGCCAAATCCTGACTCACAT678409CCTGTGTCATTCAAAACAGAAAGAAACGAGCGGCCTGAAACTCGTCCTGA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:1912106-1912125
CAGTTTGCATTAAGGAGCTCCTGAAGCAAG1912106CCTGTGTCATTCAAAACAGACAGAGTCCAGATCCAGACAACTTGAAATGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:1006817-1006836
AAGCTTGCATTAAGGATCTCCTGAAACAAG1006817CCTGTGTCATTCAAAACAGACAAAGATGAGTCCAGACAACAAGTTGAAAA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:37384121-37384140
CAGTTTGCATTAAGGAGCTCCTGAAGCAAG37384121CCTGTGTCATTCAAAACAGACAAAGATGAGAGAGTCCAGATCCAGACAAC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:1006817-1006836
AAGCTTGCATTAAGGATCTCCTGAAACAAG1006817CCTGTGTCATTCAAAACAGACAAAGATGAGTCCAGACAACAAGTTGAAAA
Acleris literana genome assembly, chromosome: 21.
OX335689.1:4336798-4336817
TATCCAGTTGAATGTCTCTTTGATCGATAT4336798CCTGTGTCATTCAAAACAGATAACGTGTTATATCTTATACAGGGTGTTTG
Trididemnum nubilum genome assembly, chromosome: 2.
OZ014470.1:2196095-2196114
GCCTCCTCCCTGGCTACGCCTATGCCTGAC2196095CCTGTGTCATTCAAAACAGAAAAAAAATTTTTGATTGGCTGAAGGTCTAG
Felis catus Senzu DNA, chromosome: F2, American Shorthair breed.
AP023169.1:55752750-55752769
ATAGGAAACATCAATAGAAATACTTCTACT55752750TCTGTTTTGAATGACACAGGCCACGAGAGTTACACATAGTTGTTTGAGAT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:46015166-46015185
TCTGTCTGGATCTGGACTCTCTCATCTTTG46015166TCTGTTTTGAATGACACAGGCTTGCTTCAGGAGCTCCTTAATGCAAACTG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:30591182-30591201
TCATTTCAAGTTGTCTGGATCTGGACTCTG30591182TCTGTTTTGAATGACACAGGCTTGCTTCAGGAGCTCCTTAATGCAAACTG
Brassica rapa genome, scaffold: A01.
LR031571.1:36571509-36571528
GTTGTCTGGATCTGGACTCTCTCATCTTTG36571509TCTGTTTTGAATGACACAGGCTTGCTTCAGGAGCTCCTTAATGCAAACTG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:50166812-50166831
GTTGTCTGGATCTGGACTCTCTCATCTTTG50166812TCTGTTTTGAATGACACAGGCTTGCTTCAGGAGCTCCTTAATGCAAACTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTGTGTCATTCAAAACAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTGTGTCATTCAAAACAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.233 | 0.224 | search_plus_done; http://172.18.8.135:50400/match?q=CCTGTGTCATTCAAAACAGA&k=0&no_gap=0&offset=0&limit=50
0.349 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGTTTTGAATGACACAGG&k=0&no_gap=0&offset=0&limit=43
0.352 | 0.004 | cgi_end;

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