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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-07 13:00:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS2DC50TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY937813.1:409-430
GTCTTGGTTACATTCAGCCTTCTCATCTTC409CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATCGTTGG
RR3F503TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD550200.1:388-409
GTCTTGGTTACATTCAGCCTTCTCATCTTC388CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATCGTTGG
RS2F494TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD569625.1:365-386
GTCTTGGTTACATTCAGCCTTCTCATCTTC365CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATCGTTGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_82367.
FX787505.1:252-273
GTCTTGGTTACATTCAGCCTTCTCATCTTC252CCTTCACCGAGCTTCTCAGATTTATTCT
TSA: Raphanus sativus RS04446 mRNA sequence.
JT788993.1:368-389
GTCTTGGTTACATTCAGCCTTCTCATCTTC368CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATTGTTGG
TSA: Raphanus sativus RS04447 mRNA sequence.
JT788994.1:368-389
GTCTTGGTTACATTCAGCCTTCTCATCTTC368CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATTGTTGG
Raphanus sativus DNA, clone: RSDH22I12_RP-2.
GA883919.1:224-245
CCAACAATGGAGAAGTTAGCAAAGAGAATA224AATCTGAGAAGCTCGGTGAAGGGAAGATGAGAAGGCTGAATGTAACCAAGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTTCACCGAGCTTCTCAGATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTCACCGAGCTTCTCAGATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.664 | 0.656 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTCACCGAGCTTCTCAGATT&k=0&no_gap=0&offset=0&limit=50
0.785 | 0.121 | search_minus_done; http://172.18.8.135:50400/match?q=AATCTGAGAAGCTCGGTGAAGG&k=0&no_gap=0&offset=0&limit=44
0.786 | 0.001 | cgi_end;

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