GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 19:28:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392552.1:55827539-55827559
TAAAAACCAAACTTCAATCAAGATTTACGT55827539CGAGTTCAAATCAAGAATGGCAAAGAAATTCACGTGGAGTTCAAAAATTTT
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392561.1:56997741-56997761
TAAAAACCAAACTTCAATCAAGATTTACGT56997741CGAGTTCAAATCAAGAATGGCAAAGAAATTCACGTGGAGTTCAAAAATTTT
E012389-024-012-E14-SP6 MPIZ-ADIS-024-leaf Beta vulgaris cDNA clone 024-012-E14 5-PRIME, mRNA sequence.
BQ586664.1:215-235
AAAATTTTTGAACTCCACTTTAATTTCTTT215GCCATTCTTGATTTGAACTCGACGTAAATGGGGACCGAAGTTTGGTTTTTA
TSA: Beta vulgaris Locus_4108_Transcript_1/5_Confidence_0.200_Length_339 mRNA sequence.
JP493901.1:32-52
AAAATTTTTGAACTCCACGTGAATTTCTTT32GCCATTCTTGATTTGAACTCGACGTAAATCTTGATTGAAGTTTGGTTTTTA
TSA: Beta vulgaris Locus_4108_Transcript_4/5_Confidence_0.733_Length_2086 mRNA sequence.
JP493904.1:32-52
AAAATTTTTGAACTCCACGTGAATTTCTTT32GCCATTCTTGATTTGAACTCGACGTAAATCTTGATTGAAGTTTGGTTTTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGAGTTCAAATCAAGAATGGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAGTTCAAATCAAGAATGGC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.163 | 0.154 | search_plus_done; http://172.18.8.135:50400/match?q=CGAGTTCAAATCAAGAATGGC&k=0&no_gap=0&offset=0&limit=50
0.306 | 0.143 | search_minus_done; http://172.18.8.135:50400/match?q=GCCATTCTTGATTTGAACTCG&k=0&no_gap=0&offset=0&limit=48
0.308 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).