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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:08:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 126 unordered pieces.
AC234733.2:62311-62330
ACCATTATGCACCCATATGCCCAAAACTTT62311CGCAACACTCAACCCTAACAAATTTTTTTTTATAATTCTTTATTGTTTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 98 unordered pieces.
AC234734.2:185876-185895
ACCATTATGCACCCATATGCCCAAAACTTT185876CGCAACACTCAACCCTAACAAATTTTTTTTTATAATTCTTTATTGTTTTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:25524112-25524131
ACCATTATGTACCCATATGCCCAAAACTTT25524112CGCAACACTCAACCCTAACAAAATTTTTTTTTATCATTCTTTATTGTTTT
Brassica rapa genome, scaffold: A07.
LR031574.1:24430682-24430701
ACCATTATGTACCCATATGCCCAAAACTTT24430682CGCAACACTCAACCCTAACAAAAATTTTTTTTATCATTCTTTATTGTTTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:24768922-24768941
ACCATTATGTACCCATATGCCCAAAACTTT24768922CGCAACACTCAACCCTAACAAAAATTTTTTTTATCATTCTTTATTGTTTT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_17331.
FX699716.1:1668-1687
AAAACAATAAAGAATTATAAAAAAAAAATT1668TGTTAGGGTTGAGTGTTGCGAAAGTTTTGGGCATATGGGTGCATAATGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_33212.
FX787437.1:447-466
AAAACAATAAAGAATTATAAAAAAAAAATT447TGTTAGGGTTGAGTGTTGCGAAAG
KBrB024E22R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB024E22, genomic survey sequence.
DX028410.1:774-793
AAAACAATAAAGAATTATAAAAAAAAAATT774TGTTAGGGTTGAGTGTTGCGAAAGTTTTGGGCATATGGGTGCATAATGGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034I14, complete sequence.
AC189311.2:2047-2066
AAAACAATAAAGAATTATAAAAAAAAAATT2047TGTTAGGGTTGAGTGTTGCGAAAGTTTTGGGCATATGGGTGCATAATGGT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:3859693-3859712
AAAACAATAAAGAATGATAAAAAAAAATTT3859693TGTTAGGGTTGAGTGTTGCGAAAGTTTTGGGCATATGGGTACATAATGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGCAACACTCAACCCTAACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCAACACTCAACCCTAACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.191 | 0.183 | search_plus_done; http://172.18.8.135:50400/match?q=CGCAACACTCAACCCTAACA&k=0&no_gap=0&offset=0&limit=50
0.322 | 0.131 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTAGGGTTGAGTGTTGCG&k=0&no_gap=0&offset=0&limit=45
0.326 | 0.004 | cgi_end;

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