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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:29:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5934.
FX700743.1:1143-1162
GATTCGTGACGTTGGAGAGATTCAGAAGCT1143CGCCAAGAACCACTCTCTTCCTGGTGACACGTTCCTCCTCCGTGGCCATA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_60454.
FX772199.1:232-251
GATTCGTGACGTTGGAGAGATTCAGAAGCT232CGCCAAGAACCACTCTCTTCTTGGTGACACGTTCCTCCTCTGTGGCCATA
BOHXI58TF BO_2_3_KB Brassica oleracea genomic clone BOHXI58, genomic survey sequence.
BH669763.1:122-141
GATTCGTGACGTTGGAGAGATTCGGAAGCT122CGCCAAGAACCACTCTCTTCTTGGTGACACGTTCCTCCTCCGTGGCCATA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:3547425-3547444
GATTCGTGACGTTGGAGAGATTCAGAAGCT3547425CGCCAAGAACCACTCTCTTCCTGGTGACACGTTCCTCCTCCGTGGCCATA
Brassica rapa genome, scaffold: A10.
LR031577.1:3731411-3731430
GATTCGTGACGTTGGAGAGATTCAGAAGCT3731411CGCCAAGAACCACTCTCTTCCTGGTGACACGTTCCTCCTCCGTGGCCATA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:3762743-3762762
GATTCGTGACGTTGGAGAGATTCAGAAGCT3762743CGCCAAGAACCACTCTCTTCCTGGTGACACGTTCCTCCTCCGTGGCCATA
Brassica oleracea var. viridis mRNA, clone: KALE-099F20, 5' end sequence.
DK493553.1:145-164
TATGGCCACGGAGGAGGAACGTGTCACCAA145GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC
Brassica oleracea var. viridis mRNA, clone: KALE-146N18, 5' end sequence.
DK511700.1:181-200
TATGGCCACGGAGGAGGAACGTGTCACCAA181GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC
BNBS4DCT_UP_020_D02_25MAR2005_010 Brassica napus seeds BNBS4DCT Brassica napus cDNA 5', mRNA sequence.
EE454919.1:140-159
TATGGCCACGGAGGAGGAACGTGTCACCAA140GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC
EST3243 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B140B091, mRNA sequence.
EL625737.1:185-204
TATGGCCACGGAGGAGGAACGTGTCACCAA185GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC
0122560 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV117248.1:184-203
TATGGCCACGGAGGAGGAACGTGTCACCAA184GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC
BR036579 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-080B06 5', mRNA sequence.
EX051935.1:116-135
TATGGCCACGGAGGAGGAACGTGTCACCAG116GAAGAGAGTGGTTCTTGGCGAGCTTCTGAATCTCTCCAACGTCACGAATC
BR085533 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-015E10 5', mRNA sequence.
EX099243.1:388-407
TATGGCCACGGAGGAGGAACGTGTCACCAG388GAAGAGAGTGGTTCTTGGCGAGCTTCTGAATCTCTCCAACGTCACGAATC
RS2CT88TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX897369.1:144-163
TATGGCCACGGAGGAGGAACGCGTCACCAA144GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTGTCCAACGTCGCGAATC
RR3D954TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY913661.1:144-163
TATGGCCACGGAGGAGGAACGCGTCACCAA144GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTGTCCAACGTCGCGAATC
BOMIK07TF BO_2_3_KB Brassica oleracea genomic clone BOMIK07, genomic survey sequence.
BH738891.1:237-256
TATGGCCACGGAGGAGGAACGTGTCACCAA237GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:23002946-23002965
TATGGCCACGGAGGAGGAACGTGTCACCAG23002946GAAGAGAGTGGTTCTTGGCGAGCTTCTGAATCTCTCCAACGTCACGAATC
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:5620809-5620828
TATGGCCACGGAGGAGGAACGTGTCACCAA5620809GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC
Brassica napus genome assembly, chromosome: C06.
HG994370.1:5055787-5055806
TATGGCCACGGAGGAGGAACGTGTCACCAA5055787GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:1954157-1954176
TATGGCCACGGAGGAGGAACGTGTCACCAA1954157GAAGAGAGTGGTTCTTGGCGAGCTTCCGAATCTCTCCAACGTCACGAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGCCAAGAACCACTCTCTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCCAAGAACCACTCTCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.347 | 0.338 | search_plus_done; http://172.18.8.135:50400/match?q=CGCCAAGAACCACTCTCTTC&k=0&no_gap=0&offset=0&limit=50
1.176 | 0.829 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGAGAGTGGTTCTTGGCG&k=0&no_gap=0&offset=0&limit=44
1.186 | 0.009 | cgi_end;

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