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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-12-16 19:13:56, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:6202754-6202773
AGAGTAGCGTAATGAGCCTCAAAGCTTACT6202754CGGAATGAAAGCCCATTAGATAAGAAATGAAATCTGAAAATGTTAAAGTG
Brassica napus genome assembly, chromosome: C09.
HG994373.1:6784578-6784597
AGAGTAGCGTAATGAGCCTCAAAGCTTACT6784578CGGAATGAAAGCCCATTAGATAAGAAATGAAATCTGAAAATGTTAAAGTG
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:6863557-6863576
AGAGTTGCGTAATGGGCCTCAAAGCTTACT6863557CGGAATGAAAGCCCATTAGATAAGAAATGAAATCTGAAAATGTTTAAGTG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:62348454-62348473
CACTTTAACATTTTCAGATTTCATTTCTTA62348454TCTAATGGGCTTTCATTCCGAGTAAGCTTTGAGGCTCATTACGCTACTCT
Salix babylonica isolate Saba01F chromosome 3Bb.
CP161349.1:10381723-10381742
CCTCATTCCAAGAAAATGAGGTTAGGTGAA10381723TCTAATGGGCTTTCATTCCGAGGGGATTTTCAACATTCTTATTTGTTTCT
Salix babylonica isolate Saba01F chromosome 3Ba.
CP161387.1:11287385-11287404
CCTCATTCCAAGAAAATGAGGTTAGGTGAA11287385TCTAATGGGCTTTCATTCCGAGGGGATTTTCAACATTCTTATTTGTTTCT
Salix caprea genome assembly, chromosome: 17.
OZ037759.1:8859326-8859345
CTCATTCCAAGAAAATTAGGCCAAGGTGAA8859326TCTAATGGGCTTTCATTCCGAGGGGATTTTCAACATTCTTATTTGTTTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGGAATGAAAGCCCATTAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGAATGAAAGCCCATTAGA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.344 | 0.334 | search_plus_done; http://172.18.8.135:50800/match?q=CGGAATGAAAGCCCATTAGA&k=0&no_gap=0&offset=0&limit=50
0.468 | 0.124 | search_minus_done; http://172.18.8.135:50800/match?q=TCTAATGGGCTTTCATTCCG&k=0&no_gap=0&offset=0&limit=47
0.471 | 0.003 | cgi_end;

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