GGGenome | Results

2025-04-06 10:33:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

UCRCS01_02ag06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag06, mRNA sequence.
CB290985.1:138-158

CGTTTAAGCCTTACTGGGATATATTCTTGA138CGGGCGTAAGAGGGATTTTGCATATGCCATTGGGAGGGCAGCTATCTTCTT

FLAVEDO0002_IIIaR_H04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_H04 3', mRNA sequence.
CB304717.1:244-264

AGTTTAAGCCTTACTGGTATATATTCTTGA244CGGGCGTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTT

FLAVEDO0003_IVaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C09 3', mRNA sequence.
CB305043.1:146-166

AGTTTAAGCCTTACTGGTATATATTCTTGA146CGGGCGTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTT

UCRCS04_0005F10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005F10, mRNA sequence.
CN184332.1:189-209

AGTTTAAGCCTTACTGGTATATATTCTTGA189CGGGCGTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTT

CP-17_D06_047.f1 Citrus paradisi young grapefruit leaf cDNA library Citrus x paradisi cDNA clone CP-17_D06_047 3', mRNA sequence.
EB684762.1:183-203

AGTTTAAGCCTTACTGGTATATATTCTTGA183CGGGCGTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTT

JP 2022104707-A/1: Determining methods of carotenoid content in citrus fruits.
PA551512.1:4837-4857

AAGAAGATAGCTGCACTACCAATTGCATAT4837GCAAAATCCCTCTTACGCCCGTCGAGAATATATACCAGTAAGGCTTAAACT

UCRCS01_02ag06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag06, mRNA sequence.
CB290986.1:407-427

AAGAAGATAGCTGCACTACCAATTGCATAT407GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

UCRCS04_0005F10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005F10, mRNA sequence.
CN184333.1:206-226

AAGAAGATAGCTGCACTACCAATTGCATAT206GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

C02008D02SK IF1 Citrus clementina cDNA clone C02008D02, mRNA sequence.
CX289036.1:78-98

AAGAAGATAGCTGCACTACCAATTGCATAT78GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

Citrus nobilis x Citrus kinokuni mRNA, clone: EGJ_0280, 5'-end sequence, expressed in ovule.
DC886676.1:29-49

GAAGATAGCTGCACTACCAATTGCATAT29GCAAAATCCCTCTTACGCCCGTCGAGAATATATACCAGTAAGGCTTAAACT

Citrus limon mRNA, clone: LLL0487, 5'-end sequence, expressed in leaf.
DC891755.1:208-228

AAGAAGATAGCTGCACTACCAATTGCATAT208GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

Citrus unshiu mRNA, clone: STG0097, 5'-end sequence, expressed in style.
DC898135.1:81-101

AAGAAGATAGCTGCACTACCAATTGCATAT81GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

KN0AAK2AF06FM1 AbsCFruit Citrus sinensis cDNA 5', mRNA sequence.
DY257357.1:790-810

AAGAAGATAGCTGCACTACCCATTGCATAT790GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGGCTTAAAC

KN0AAK1AH09FM2 AbsCFruit Citrus sinensis cDNA 5', mRNA sequence.
EH406409.1:228-248

AAGAAGATAGCTGCACTACCAATTGCATAT228GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

CS12-C1-001-020-H03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY754846.1:541-561

AAGAAGATAGCTGCACTACCAATTGCATAT541GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

CR05-C1-100-087-H02-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY765656.1:462-482

AAGAAGATAGCTGCACTACCAATTGCATAT462GCAAAATCCCTCTTACGCCCGTCGAGAATATATACCAGTAAGGCTTAAACT

CR05-C3-702-084-B07-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY807490.1:444-464

AAGAAGATAGCTGCACTACCAATTGCATAT444GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

CA26-C1-002-090-D10-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence.
EY849673.1:340-360

AAGAAGATAGCTGCACTACCAATTGCATAT340GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

CG32-C1-003-048-D11-CT.F Mexican lime leaf, greenhouse plant Citrus aurantiifolia cDNA, mRNA sequence.
EY854447.1:644-664

AAGAAGATACCTGCACTACCAATTGCATAT644GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAAGGCTTAAAC

KN0AAK1AH09FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AH09, mRNA sequence.
FC871526.1:228-248

AAGAAGATAGCTGCACTACCAATTGCATAT228GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

C31708G06EF StrClemenN Citrus clementina cDNA clone C31708G06, mRNA sequence.
FC923772.1:538-558

AAGAAGATAGCTGCACTACCAATTGCATAT538GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

514 'Cara cara' navel orange fruit cDNA library Citrus sinensis cDNA clone 651 5', mRNA sequence.
GO241866.1:365-385

AAGAAGATAGCTGCACTACCAATTGCATAT365GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

Citrus unshiu mRNA for phytoene synthase, complete cds.
AB037975.1:1442-1462

AAGAAGATAGCTGCACTACCAATTGCATAT1442GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

Citrus x paradisi phytoene synthase mRNA, complete cds.
AF152892.2:1514-1534

AAGAAGATAGCTGCACTACCAATTGCATAT1514GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

Citrus unshiu phytoene synthase (Psy1) mRNA, complete cds.
AF220218.1:1375-1395

AAGAAGATAGCTGCACTACCAATTGCATAT1375GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

Citrus sinensis phytoene synthase mRNA, complete cds.
DQ235260.1:1264-1284

AAGAAGATAGCTGCACTACCAATTGCATAT1264GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAA

X Citrofortunella mitis phytoene synthase mRNA, complete cds.
EU375851.1:1264-1284

AAGAAGATAGCTGCACTACCAATTGCATAT1264GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAA

Citrus maxima phytoene synthase mRNA, complete cds.
EU375852.1:1267-1287

AAGAAGATAGCTGCACTACCAATTGCATAT1267GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAA

Citrus maxima PSY mRNA, complete cds.
KP462726.1:1270-1290

AAGAAGATAGCTGCACTACCAATTGCATAT1270GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAA

Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:4027433-4027453

AAGAAGATAGCTGCACTACCAATTGCATAT4027433GCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.269 | 0.260 | search_plus_done; http://172.18.8.135:50400/match?q=CGGGCGTAAGAGGGATTTTGC&k=0&no_gap=0&offset=0&limit=50
1.256 | 0.988 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAAATCCCTCTTACGCCCG&k=0&no_gap=0&offset=0&limit=45
1.273 | 0.017 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).