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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:45:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_7049.
FX666760.1:1238-1260
CTTTGCGGGGGAACACGGAGCGGATTTTGT1238CGGTCTGAATACATCTTTCATCATCTTTGCAGTGAATGGAGATGACAAATGAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9650.
FX698380.1:1343-1365
CTTTGCGGGAGAGCTCGGTGCGGATTTGGT1343CGGTCTGAATACATCTTTCATCATCATCTTTGTAGTGAATAAAGATAAATGAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20526.
FX732909.1:1307-1329
CTTTGCGGGAGAGCTCGGTGCGGATTTGGT1307CGGTCTGAATACATCTTTCATCATCATCTTTGTAGTGAATAAAGATAAATGAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
AC189627.2:50576-50598
CTTTGCGGGAGAGCTCGGTGCGGATTTGGT50576CGGTCTGAATACATCTTTCATCATCATCTTTGTAGTGAATAAAGATAAATGAA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:9769819-9769841
CTTTGCGGGAGAACTCGGTGCGGATTTGGT9769819CGGTCTGAATACATCTTTCATCATCATCTTTGCAGTGAGTAAAGACGAAAAGG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:44106330-44106352
CTTTGCGGGGGAACACGGAGCGGATTTTGT44106330CGGTCTGAATACATCTTTCATCATCTTTGCAGTGAATGGAGATGACAAATGAA
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:7560287-7560309
CTTTGCGGGAGAACTAGGTGCGGATTTGGT7560287CGGTCTGAATACATCTTTCATCATCATCTTTGCAGAGTGAATAAAAGACAAAG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:44106330-44106352
CTTTGCGGGGGAACACGGAGCGGATTTTGT44106330CGGTCTGAATACATCTTTCATCATCTTTGCAGTGAATGGAGATGACAAATGAA
Cochlearia excelsa genome assembly, chromosome: 4.
OY748330.1:10215399-10215421
CTTTGCTGGAGAACACGGAGCGGATTTTGT10215399CGGTCTGAATACATCTTTCATCATCATCTTGTGGAGAAAGAAGAAGAAAGACA
Draba incana genome assembly, chromosome: 15.
OY755216.1:17483079-17483101
CTTTGCTGGAGAACACGGAGCGGATTTGGT17483079CGGTCTGAATACATCTTTCATCATCTTTGGACTGAAATGGAGGATTGGTAGGA
39RDBRT_UP_012_F07_05APR2004_053 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX270639.1:66-88
TTCATTTATCTTTATTCACTACAAAGATGA66TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
39RDBRT_UP_031_F08_20JUL2004_054 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX271785.1:63-85
TTCATTTATCTTTATTCACTACAAAGATGA63TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
39RDBRT_UP_038_D09_21JUL2004_073 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272299.1:17-39
TTCACTACAAAGATGA17TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAGAG
BNDH2DCT_UP_006_A07_12JUN2004_063 Brassica napus seeds BNDH2DCT Brassica napus cDNA 5', mRNA sequence.
DW997489.1:60-82
TTCATTTATCTTTATTCACTACAAAGATGA60TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
40JKME7D_UP_020_F03_21MAY2004_021 40JKME7D Brassica napus cDNA 5', mRNA sequence.
DY016422.1:71-93
CCTTTTCGTCTTTACTCACTGCAAAGATGA71TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGTTCTCCCGCAAAG
39RDBRT_UP_094_C03_25JAN2006_027 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
ES937301.1:65-87
ATTCATTTATCCTCTTCACTACAAAGATGA65TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
BNAEN1GH_UP_014_D01_31MAY2006_009 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES987210.1:71-93
CCTTTTCGCCTTTACTCACTGCAAAGATGA71TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGTTCTCCCGCAAAG
BNSCS4CT_UP_175_C07_28MAY2007_059 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV071894.1:59-81
TTCATTTATCTTTATTCACTACAAAGATGA59TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
13JKBNM2_UP_065_A02_1OCT2007_016 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR439379.1:58-80
TTCATTTATCTTTATTCACTACAAAGATGA58TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_66287.
FX761298.1:62-84
TTCATTTGTCATCTCCATTCACTGCAAAGA62TGATGAAAGATGTATTCAGACCGACCAAATCCGCTCCGTGTTCCCCCGCAAAG
TSA: Chorispora bungeana CK_07989 mRNA sequence.
JW996055.1:74-96
TTTTTTCTTCTTCTCCATTCACTCCAAAGA74TGATGAAAGATGTATTCAGACCGACCAAATCGGCTCCGAGCTCTCCTGCAAAG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:22697032-22697054
TTCATTTATCTTTATTCACTACAAAGATGA22697032TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:22679255-22679277
TTCATTTATCTTTATTCACTACAAAGATGA22679255TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:46031412-46031434
CCTTTTCGTCTTTACTCACTGCAAAGATGA46031412TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGTTCTCCCGCAAAG
Brassica rapa genome, scaffold: A03.
LR031572.1:22453334-22453356
TTCATTTATCTTTATTCACTACAAAGATGA22453334TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:48880802-48880824
TCTCTTCGTCTTTACTCACTGCAAAGATGA48880802TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGTTCTCCCGCAAAG
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:46090211-46090233
CTTTGTCTTTTATTCACTCTGCAAAGATGA46090211TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCTAGTTCTCCCGCAAAG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:22581353-22581375
TTCATTTATCTTTATTCACTACAAAGATGA22581353TGATGAAAGATGTATTCAGACCGACCAAATCCGCACCGAGCTCTCCCGCAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGGTCTGAATACATCTTTCATCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGTCTGAATACATCTTTCATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=CGGTCTGAATACATCTTTCATCA&k=0&no_gap=0&offset=0&limit=50
0.751 | 0.563 | search_minus_done; http://172.18.8.135:50400/match?q=TGATGAAAGATGTATTCAGACCG&k=0&no_gap=0&offset=0&limit=40
0.762 | 0.012 | cgi_end;

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