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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:26:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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G.hir-stem 1121 PCR amplified cotton stem cDNA Gossypium hirsutum cDNA, mRNA sequence.
DN758617.1:315-334
ATGTTGGTGGCAAAGTAATCGGAACTCACT315CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
G.hir-stem 1141 PCR amplified cotton stem cDNA Gossypium hirsutum cDNA, mRNA sequence.
DN758637.1:315-334
ATGTTGGTGGCAAAGTAATCGGAACTCACT315CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
GH_LSL24E03.f GH_LSL Gossypium hirsutum cDNA clone GH_LSL24E03 5', mRNA sequence.
DV849784.1:428-447
ATGTTGGTGGCAAAGTAATCGGAACTCACT428CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
GH_OVFIB_01-01-10R_A04_InvR_22Jan04_032_F Ovules - day of anthesis Gossypium hirsutum cDNA, mRNA sequence.
DW232062.1:123-142
ATGTTGGTGGCAAAGTAATCGGAACTCACT123CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
GH_RTFR_02R_A04_InvR_13Sep04_032_F Root (free) - 7-10 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW233227.1:185-204
ATGTTGGTGGCAAAGTAATCGGAACTCACT185CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
GH_TS_02-01-10R_D01_InvR_09Feb04_009_F Stem - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW239781.1:230-249
ATGTTGGTGGCAAAGTAATCGGAACTCACT230CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
GH_TSnorm_01-01-01R_A03_InvR_24Feb04_031_F Stem (norm) - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW243029.1:230-249
ATGTTGGTGGCAAAGTAATCGGAACTCACT230CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
GH_TMIRS_176_A07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW513770.1:110-129
ATGTTGGTGGCAAAGTAATCGGAACTCACT110CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
B03_P-22_026 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX166193.1:225-244
ATGTTGGTGGCAAAGTAATCGGAACTCACT225CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
B03_P-22_026 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY197104.1:225-244
ATGTTGGTGGCAAAGTAATCGGAACTCACT225CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
2P12-A3-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG454731.1:170-189
ATGTTGGTGGCAAAGTAATCGGAACTCACT170CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
E04-54E04 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK795586.1:417-436
ATGTTGGTGGCAAAGTAATCGGAACTCACT417CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
Gossypium hirsutum phospholipase D delta isoform 1a mRNA, complete cds.
AY138252.1:2805-2824
ATGTTGGTGGCAAAGTAATCGGAACTCACT2805CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:94567513-94567532
ATGTTGGTGGCAAAGTAATCGGAACTCACT94567513CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:107740379-107740398
ATGTTGGTGGCAAAGTAATCGGAACTCACT107740379CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATTAAT
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:139285239-139285258
ATGTTGGTGGCAAAGTAATCGGAACTCACT139285239CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATTAAT
Gossypium herbaceum clone NBRI_A2_652 simple sequence repeat marker, mRNA sequence.
HQ527790.1:194-213
TGTTGGTGGCAAAGTAATCNGGAACTCACT194CGGTTAAGCTTCCAGACATTCTNTACGACGTAAATCACCATGTGTATCAA
Gossypium hirsutum clone NBRI_TRANS-925 microsatellite sequence.
JX964656.1:40-59
ATGTTGGTGGCAAAGTAATCGGAACTCACT40CGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAAT
GA__Ed0043B08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0043B08r, mRNA sequence.
BQ411825.1:284-303
ATTGATACACATGGTGATTTACGTCGTAAG284AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
GR__Ea04F05.r GR__Ea Gossypium raimondii cDNA clone GR__Ea04F05 3', mRNA sequence.
CO086387.1:238-257
ATTGATACACATGGGGATTTACGTCGTAAA238AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
GR__Ea11O09.r GR__Ea Gossypium raimondii cDNA clone GR__Ea11O09 3', mRNA sequence.
CO091425.1:239-258
ATTGATACACATGGGGATTTACGTCGTAAA239AATGTCTGGAAGCTTAACCGAGGGAGTTCCGATTACTTTGCCACCAACAT
GR__Ea17C21.f GR__Ea Gossypium raimondii cDNA clone GR__Ea17C21 5', mRNA sequence.
CO094835.1:238-257
ATTGATACACATGGTGATTTACGTCGGAAA238AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
GR__Ea25I04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea25I04 5', mRNA sequence.
CO100234.1:238-257
ATTGAAACCCATGGGGATTTACCTCGAAAA238AATGTCTGGAAGCTTAACCGAGGGAGTTCCGATTACTTTGCCCCCAACAT
GR__Eb0036A18.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0036A18 5', mRNA sequence.
CO105729.1:238-257
ATTGATACACATGGTGATTTACGTCGTAAG238AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
GR__Eb024G17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb024G17 5', mRNA sequence.
CO120708.1:238-257
ATTGATACACATGGGGATTTACGTCGTAAG238AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
COT_DD_B08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence.
DT048657.1:266-285
ATGGGTACACATGGTGATTTACGTCGTAAG266AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
COT_DE_F10 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence.
DT048773.1:279-298
ATTGATACACATGGTGATTTACGTCGTAAG279AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
G07_51500.79.S1108194026.LDYN1-2479.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ117970.1:263-282
ATTGATACACATGGTGATTTACGTCGTAAG263AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:294715-294734
ATTGATACACATGGTGATTTACGTCGTAAG294715AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:286516-286535
ATTGATACACATGGTGATTTACGTCGTAAG286516AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:284034-284053
ATTGATACACATGGTGATTTACGTCGTAAG284034AATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGGTTAAGCTTCCAGACATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGTTAAGCTTCCAGACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.112 | 1.104 | search_plus_done; http://172.18.8.135:50400/match?q=CGGTTAAGCTTCCAGACATT&k=0&no_gap=0&offset=0&limit=50
1.764 | 0.652 | search_minus_done; http://172.18.8.135:50400/match?q=AATGTCTGGAAGCTTAACCG&k=0&no_gap=0&offset=0&limit=32
1.773 | 0.008 | cgi_end;

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