GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:50:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Human DNA sequence from clone RP11-295G24 on chromosome 9.
AL445645.10:102596-102615
AGCAGGTTAGGAGACAGCAGGAACTGCCTC102596CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Homo sapiens DNA, chromosome 9, nearly complete genome.
AP023469.1:133415676-133415695
AGCAGGTTAGGAGACAGCAGGAACTGCCTC133415676CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Homo sapiens isolate CHM13 chromosome 9.
CP068269.2:145070561-145070580
AGCAGGTTAGGAGACAGCAGGAACTGCCTC145070561CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Homo sapiens isolate NA24385 chromosome 9.
CP139512.1:138193793-138193812
AGCAGGTTAGGAGACAGCAGGAACTGCCTC138193793CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Homo sapiens isolate NA24385 chromosome 9.
CP139535.1:125876589-125876608
AGCAGGTTAGGAGACAGCAGGAACTGCCTC125876589CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Meles meles genome assembly, chromosome: 4.
OV277444.1:44245060-44245079
GGCCAGAATAGGCAAACAGAAAGTGGTTGC44245060CTAGAGTTTGGGAGGGGGAGAGGGAACAATGAGAAGTGATTGCTAATGAG
Sequence 878 from patent US 10724096.
MV447978.1:144370-144389
AGCAGGTTAGGAGACAGCAGGAACTGCCTC144370CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Sequence 992 from patent US 10724096.
MV448092.1:133170-133189
AGCAGGTTAGGAGACAGCAGGAACTGCCTC133170CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Sequence 878 from patent US 11549145.
OS136778.1:144370-144389
AGCAGGTTAGGAGACAGCAGGAACTGCCTC144370CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Sequence 992 from patent US 11549145.
OS136892.1:133170-133189
AGCAGGTTAGGAGACAGCAGGAACTGCCTC133170CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Uncultured Sulfurimonas sp. clone TVG01-33 16S ribosomal RNA gene, partial sequence.
KF545011.1:628-647
AACCATAGAACTGCATTGGAAACTGGTTAC628CTAGAGTTTGGGAGGGGGAGATGGAATAAGTGGTGTAGGGGTAAAAATCG
Eukaryotic synthetic construct chromosome 9.
CP034508.1:135724134-135724153
AGCAGGTTAGGAGACAGCAGGAACTGCCTC135724134CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
Eukaryotic synthetic construct chromosome 9.
CP034533.1:135724134-135724153
AGCAGGTTAGGAGACAGCAGGAACTGCCTC135724134CTAGAGTTTGGGAGGGGGAGACAGGAGGGTTGGGGGACCAGAGACAAGAG
EST1233296 ESTSYN-F Musa acuminata AAA Group cDNA clone pESTSYNF-10A8 5', mRNA sequence.
ES433089.1:169-188
CCGCAGCCGCTGCTGCCAACCGGAGGAAAT169CTAGAGTTTGGGAGGGGGAGAGGGAAGGAGGGGACGGTGATCAGCCGGAA
TSA: Musa acuminata AAA Group Unigene16004_NK1 mRNA sequence.
JV439338.1:1315-1334
CCGCAGCCGCTGCTGCCAACCGGAGGAAAT1315CTAGAGTTTGGGAGGGGGAGAGGGAAGGAGGGGACGGTGATCAGCCGGAA
Musa troglodytarum cultivar karat chromosome 1.
CP097502.1:24869731-24869750
CCGCAGCCGCTGCTGCCAACCGGAGGAAAT24869731CTAGAGTTTGGGAGGGGGAGAGGGAAGGAGGGGACGGTAATCAGCCGGAA
Homo sapiens chromosome 9q34, clone 269A1, complete sequence.
AC004589.1:16606-16625
CTCTTGTCTCTGGTCCCCCAACCCTCCTGT16606CTCCCCCTCCCAAACTCTAGGAGGCAGTTCCTGCTGTCTCCTAACCTGCT
Caprimulgus europaeus genome assembly, chromosome: 17.
OU015541.1:11821228-11821247
CCACCAAAAAAAAGAAAAAAAACAAGATTG11821228CTCCCCCTCCCAAACTCTAGGTGAAGAACTAGGAACCAGCAAACGACAAT
TSA: Musa acuminata AAA Group Unigene14911_B1 mRNA sequence.
JV360483.1:111-130
TTCCGGCTGATCACCGTCCCCTCCTTCCCT111CTCCCCCTCCCAAACTCTAGATTTCCTCCGGTTGGCAGCAGCGGCTGGGG
Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-168A7.
AL161726.8:2874-2893
CTCTTGTCTCTGGTCCCCCAACCCTCCTGT2874CTCCCCCTCCCAAACTCTAGGAGGCAGTTCCTGCTGTCTCCTAACCTGCT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A01.
HG996466.1:10303320-10303339
TTCCGGCTGATCACCGTCCCCTCCTTACCT10303320CTCCCCCTCCCAAACTCTAGATTTCCTCCGGTTGGCAGCAGCGGCTGCGG
Musa schizocarpa genome assembly, chromosome: S01.
LS990915.1:11143067-11143086
TTCCGGCTGATCACCGTCCCCTCCTTCCCT11143067CTCCCCCTCCCAAACTCTAGATTTCCTCCGGTTGGCAGCAGCGGCTGCGG
Onchidella celtica genome assembly, chromosome: 4.
OZ007570.1:73998568-73998587
ATGCGCCGGAAAGTTTAGCATAAAAATAAC73998568CTCCCCCTCCCAAACTCTAGGGGCGGTATGCGAATTTTCCCGTCTTATTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTAGAGTTTGGGAGGGGGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAGAGTTTGGGAGGGGGAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.453 | 0.445 | search_plus_done; http://172.18.8.135:50400/match?q=CTAGAGTTTGGGAGGGGGAG&k=0&no_gap=0&offset=0&limit=50
0.537 | 0.083 | search_minus_done; http://172.18.8.135:50400/match?q=CTCCCCCTCCCAAACTCTAG&k=0&no_gap=0&offset=0&limit=34
0.542 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).