GGGenome | Results

2025-04-09 08:53:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

39RDBRT_UP_049_D05_22JUL2004_041 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX273040.1:126-145

TCTCTTAAAACAGTTTAAATCCGTGATTCT126CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAACGAAGAAGAA

BNSCSICT_UP_013_A08_23NOV2004_064 Brassica napus seed coat BNSCSICT Brassica napus cDNA 5', mRNA sequence.
DY010916.1:127-146

TTCTCTTAAACAGTTTAAATCCTTGATTCT127CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAAAGAAGAAGAA

BNYS2DCT_UP_015_A08_01MAR2005_064 Brassica napus seeds BNYS2DCT Brassica napus cDNA 5', mRNA sequence.
EE474528.1:122-141

TTCTCTTAAACAGTTCAAATCCGTGATTCT122CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAACGAAGAAGAA

BNSCS3CT_UP_055_B02_04MAY2007_014 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV040878.1:127-146

TTCTCTTAAACAGTTCAAATCCGTGATTCT127CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAACGAAGAAGAA

0118308 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV112996.1:171-190

TTCTCTTAAACAGTTTAAATCCTTGATTCT171CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAAAGAAGAAGAA

BR077519 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-085H01 5', mRNA sequence.
EX091229.1:81-100

TTCTCTTAAACAGTTCAAATCCGTGATTCT81CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA

BR080371 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-144H08 5', mRNA sequence.
EX094081.1:136-155

TTCTCTTAAACAGTTCAAATCCGTGATTCT136CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA

BR084181 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-057C04 5', mRNA sequence.
EX097891.1:139-158

TTCTCTTAAACAGTTCAAATCCGTGATTCT139CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA

BR084971 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-007H04 5', mRNA sequence.
EX098681.1:135-154

TTCTCTTAAACAGTTCAAATCCGTGATTCT135CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF08H14, 5'-end sequence.
FY066390.1:128-147

TCTCTTAAAACAGTTTAAATCCGTGATTCT128CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAACGAAGAAGAA

c08_12na_2k.s 12na Brassica napus cDNA clone c08_12na_2k 5, mRNA sequence.
GT081273.1:141-160

TTCTCTTAAACAGTTTAAATCCTTGATTCT141CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAAAGAAGAAGAA

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9536.
FX704971.1:128-147

TTCTCTTAAACAGTTCAAATCCGTGATTCT128CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:12462489-12462508

TTCTCTTAAACAGTTTAAATCCGTGATTCT12462489CTAGATTCTCCACATCCAGGAGGTGAGTTTCTCCTCCGATCTCTCGTTCC

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_31807.
FX759046.1:523-542

TTCTTCTACTTTCTAAACGCACAAGAGCCT523CCTGGATGTGGAGAATCTAGAGAATCACGGATTTAAACTGTTTAAGAGAA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084F02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189487.2:154497-154516

GAAACGAGAGATCGGAGGAGAAACTCACCT154497CCTGGATGTGGAGAATCTAGAGAATCACGGATTTGAACTGTTTAAGAGAA

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59545945-59545964

GGAACGAGAGATCGGAGGAGAAACTCACCT59545945CCTGGATGTGGAGAATCTAGAGAATCGCGGATTTGAACTGTTTAAGAGAA

Brassica napus genome assembly, chromosome: A09.
HG994363.1:43397407-43397426

GAAACGAGAGATCGGAGGAGAAACTCACCT43397407CCTGGATGTGGAGAATCTAGAGAATCACGGATTTGAACTGTTTAAGAGAA

Brassica napus genome assembly, chromosome: C08.
HG994372.1:29297458-29297477

GAACGAGAGGATCGGAGGAGAAACTCACCT29297458CCTGGATGTGGAGAATCTAGAGAATCAAGGATTTAAACTGTTTAAGAGAA

Brassica rapa genome, scaffold: A09.
LR031568.1:47720614-47720633

GAAACGAGAGATCGGAGGAGAAACTCACCT47720614CCTGGATGTGGAGAATCTAGAGAATCACGGATTTGAACTGTTTAAGAGAA

Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:38583140-38583159

GGAACGAGAGATCGGAGGAGAAACTCACCT38583140CCTGGATGTGGAGAATCTAGAGAATCACGGATTTAAACTGTTTAAGAGAA

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:58187118-58187137

GAAACGAGAGATCGGAGGAGAAACTCACCT58187118CCTGGATGTGGAGAATCTAGAGAATCACGGATTTGAACTGTTTAAGAGAA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.777 | 0.768 | search_plus_done; http://172.18.8.135:50400/match?q=CTAGATTCTCCACATCCAGG&k=0&no_gap=0&offset=0&limit=50
0.846 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGGATGTGGAGAATCTAG&k=0&no_gap=0&offset=0&limit=37
0.851 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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