GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:18:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 1398 from patent US 10006042.
MI846125.1:200-223
AATTCAACCCCTCAACTCCTCATGCTCAAT200CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
Sequence 1398 from patent US 10337023.
MO169292.1:200-223
AATTCAACCCCTCAACTCCTCATGCTCAAT200CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
Sequence 1398 from patent US 10774340.
MV703039.1:200-223
AATTCAACCCCTCAACTCCTCATGCTCAAT200CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
Sequence 1398 from patent US 11499161.
OO870820.1:200-223
AATTCAACCCCTCAACTCCTCATGCTCAAT200CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CGN-29447 Leaf Coffea canephora cDNA clone cccl8n17 5', mRNA sequence.
DV687445.1:101-124
AATTCAACCCCTCAACTCCTCATGCTCAAT101CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CGN-30950 Leaf Coffea canephora cDNA clone cccl18l5 5', mRNA sequence.
DV688321.1:110-133
AATTCAACCCCTCAACTCCTCATGCTCAAT110CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CGN-31340 Leaf Coffea canephora cDNA clone cccl18c7 5', mRNA sequence.
DV688601.1:83-106
AATTCAACCCCTCAACTCCTCATGCTCAAT83CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CGN-31520 Leaf Coffea canephora cDNA clone cccl23o11 5', mRNA sequence.
DV688727.1:115-138
AATTCAACCCCTCAACTCCTCATGCTCAAT115CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CGN-31780 Leaf Coffea canephora cDNA clone cccl21n22 5', mRNA sequence.
DV688905.1:212-235
AATTCAACCCCTCAACTCCTCATGCTCAAT212CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCATTTTTTATT
CGN-32103 Leaf Coffea canephora cDNA clone cccl24b24 5', mRNA sequence.
DV689145.1:120-143
AATTCAACCCCTCAACTCCTCATGCTCAAT120CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAGCAGCAAGTCTTATT
CGN-32843 Leaf Coffea canephora cDNA clone cccl9k12 5', mRNA sequence.
DV689699.1:91-114
TATTCAGCCCCTCAACTCCTCATGCTCAAT91CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CGN-42130 Leaf Coffea canephora cDNA clone cccl28l14 5', mRNA sequence.
DV696851.1:83-106
CATTCAACCCCTCAACTCCTCATGCTCAAT83CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CGN-42308 Leaf Coffea canephora cDNA clone cccl28o17 5', mRNA sequence.
DV696999.1:67-90
AATTCAACCCCTCAACTCCTCATGCTCCCC67CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CC-L01_021_G12 Coffea young leaves Coffea canephora cDNA clone CC-L01_021_G12, mRNA sequence.
EE193327.1:97-120
AATTCAACCCCTCAACTCCTCATGCTCAAT97CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CC-L01_022_B04 Coffea young leaves Coffea canephora cDNA clone CC-L01_022_B04, mRNA sequence.
EE193350.1:81-104
AATTCAACCCCTCAACTCCTCATGCTCAAT81CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CC-L01_032_H03 Coffea young leaves Coffea canephora cDNA clone CC-L01_032_H03, mRNA sequence.
EE194133.1:96-119
AATTCAACCCCTCAACTCCTCATGCTCAAT96CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CC-L01_057_C10 Coffea young leaves Coffea canephora cDNA clone CC-L01_057_C10, mRNA sequence.
EE195301.1:211-234
AATTCAACCCCTCAACTCCTCATGCTCAAT211CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CA00-XX-LV4-046-A02-JM.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-046-A02-JM, mRNA sequence.
GT694263.1:54-77
ATTCAACCCCTCAACTCTTCATGCCTCAAT54CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CA00-XX-LV8-019-A05-EP.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-019-A05-EP, mRNA sequence.
GT700979.1:97-120
AATTCAACCCCTCAACTCTTCATGCTCAAT97CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CA00-XX-LV8-055-E09-AG.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-055-E09-AG, mRNA sequence.
GT700980.1:53-76
AATTCAACCCCTCAACTCTTCATGCTCAAT53CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CA00-XX-LV9-001-A10-EZ.F Coffea arabica LV9 Coffea arabica cDNA clone CA00-XX-LV9-001-A10-EZ, mRNA sequence.
GT712182.1:52-75
AATTCAACCCCTCAACTCTTCATGCTCAAT52CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CA00-XX-BP1-086-D11-BF.F Coffea arabica BP1 Coffea arabica cDNA clone CA00-XX-BP1-086-D11-BF, mRNA sequence.
GT722325.1:53-76
CATTCAACCCCTCAACTCTTCATGCTCAAT53CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CA00-XX-RX1-004-G10-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-004-G10-EB, mRNA sequence.
GT730748.1:53-76
AATTCAACCCCTCAACTCTTCATGCTCAAT53CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT
CCES81 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110721.1:210-233
AATTCAACCCCTCAACTCCTCATGCTCAAT210CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCCACACCAACAAAATCCCACTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCACACCAACAAAATCCCACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.652 | 1.643 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCACACCAACAAAATCCCACTT&k=0&no_gap=0&offset=0&limit=50
1.790 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTGGGATTTTGTTGGTGTGGAG&k=0&no_gap=0&offset=0&limit=26
1.790 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).