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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:02:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Elaeis guineensis isotig02603.Elguifruit mRNA sequence.
JO089856.1:1030-1049
CCCCGCCAGCGGCCGCCCCGCTTCCACATC1030CTCGAAGCTCATCGTCTCTCGCTCCTTCCTCAAATCCTCCTCCAAAGACG
TSA: Elaeis guineensis isotig02604.Elguifruit mRNA sequence.
JO089857.1:1030-1049
CCCCGCCAGCGGCCGCCCCGCTTCCACATC1030CTCGAAGCTCATCGTCTCTCGCTCCTTCCTCAAATCCTCCTCCAAAGACG
TSA: Elaeis guineensis isotig02605.Elguifruit mRNA sequence.
JO089858.1:1060-1079
CCCCGCCAGCGGCCGCCCCGCTTCCACATC1060CTCGAAGCTCATCGTCTCTCGCTCCTTCCTCAAATCCTCCTCCAAAGACG
TSA: Elaeis guineensis isotig02606.Elguifruit mRNA sequence.
JO089859.1:1060-1079
CCCCGCCAGCGGCCGCCCCGCTTCCACATC1060CTCGAAGCTCATCGTCTCTCGCTCCTTCCTCAAATCCTCCTCCAAAGACG
EoEST0331 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-262 5' similar to Syntaxin-like protein, mRNA sequence.
EL595301.1:243-262
CGTCTTTGGAGGAGGATTTGAGGAAGGAGC243GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG
OPVM00716 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 89-F05-T3.seq, mRNA sequence.
EL687110.1:89-108
CGTCTTTGGAGGAGGATTTGAGGAAGGAGC89GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG
pOP-EO03035 EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03035 similar to Syntaxin, mRNA sequence.
ES324086.1:161-180
CGTCTTTGAAGGAGGATTTGAGGAAGGAGC161GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG
pOP-EO03035_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03035 5', mRNA sequence.
EY408538.1:161-180
CGTCTTTGAAGGAGGATTTGAGGAAGGAGC161GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG
Elaeis guineensis EST, clone (6lib)_isotig28388.
LM621843.1:243-262
CGTCTTTGGAGGAGGATTTGAGGAAGGAGC243GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG
Hedera helix genome assembly, chromosome: 9.
OX359272.1:50722871-50722890
AGTCCACGGTCGGTTTGTCGTCAATGGAAA50722871GAGAGACGATGAGCTTCGAGTAACCATGCATGGACATAAGAAAAGCTTTC
Clistopyga incitator genome assembly, chromosome: 8.
OX382178.1:11126157-11126176
AAACAAAGTTGAACATTGCCGGGTTCTCAA11126157GAGAGACGATGAGCTTCGAGAATAAAAGTTTCCATCCGCACAACGGCATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCGAAGCTCATCGTCTCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCGAAGCTCATCGTCTCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.210 | 0.201 | search_plus_done; http://172.18.8.135:50400/match?q=CTCGAAGCTCATCGTCTCTC&k=0&no_gap=0&offset=0&limit=50
0.787 | 0.577 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGACGATGAGCTTCGAG&k=0&no_gap=0&offset=0&limit=46
0.796 | 0.008 | cgi_end;

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