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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 20:21:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOMNB49TF BO_2_3_KB Brassica oleracea genomic clone BOMNB49, genomic survey sequence.
BH712682.1:695-714
AATATGTATTCCAAAAAAGAAGCAACATTG695CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
oed19c01.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH987150.1:634-653
AATATGTATTCCAAAAAAGAAGCAACATTG634CTCTTCATACGCAAGTCTTTATAACCAAT
BOT01-104G11TR BOT01 Brassica oleracea genomic clone BOT01-104G11, genomic survey sequence.
FI754132.1:719-738
AATATGTATTCCAAAAAAGAAGCAACATTG719CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
Raphanus sativus cultivar WK10039 clone RsH022D04, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.
AC255195.1:46808-46827
TATTTAATTCCAATAAAGAAGAAAAATTTG46808CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAACTAATTAATAAATT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:13780193-13780212
ATATTTATTCCAAAAAAGAAGCAACATTTG13780193CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTGATAAATT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:26521444-26521463
AATATGTATTCCAAAAAAGAAGCAACATTG26521444CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:26542477-26542496
TATGTAAAAAAAAAAAAAGAAGCAACATTG26542477CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
Brassica rapa genome, scaffold: A07.
LR031574.1:12829582-12829601
ATATTTATTCCAAAAAAGAAGCAACATTTG12829582CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTGATAAATT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:29545948-29545967
AATATGTATTCCAAAAAAGAAGCAACATTG29545948CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:13121090-13121109
ATATTTATTCCAAAAAAGAAGCAACATTTG13121090CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTGATAAATT
Tinea semifulvella genome assembly, chromosome: 19.
OU342603.1:7307940-7307959
GACCCGCTACCATTTTATTGAAAGGCGCCA7307940CTCTTCATACGCAAGTCTTTAATTAGAATAGCCCCTCAAGGAACATAAAA
BOGJK36TR BOGJ Brassica oleracea genomic clone BOGJK36, genomic survey sequence.
BH567903.1:638-657
AATTTATTAATTATTTGGACTATTGGTTAT638AAAGACTTGCGTATGAAGAGCAATGTTGCTTCTTTTTTGGAATACATATT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:15944765-15944784
AATTTATCAATTATTTGGACTATTGGTTAT15944765AAAGACTTGCGTATGAAGAGCAAATGTTGCTTCTTTTTTGGAATAAATAT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:29339407-29339426
AATTTATTAATTATTTGGACTATTGGTTAT29339407AAAGACTTGCGTATGAAGAGCAATGTTGCTTCTTTTTTGGAATACATATT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:29360953-29360972
AATTTATTAATTATTTGGACTATTGGTTAT29360953AAAGACTTGCGTATGAAGAGCAATGTTGCTTCTTTTTTGGAATACATATT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:39536340-39536359
AATTTATGAATTAGTTGGACTGTTGGTTAT39536340AAAGACTTGCGTATGAAGAGCAAATTTTTCTTCTTTATTGGAATTAAATA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:39536340-39536359
AATTTATGAATTAGTTGGACTGTTGGTTAT39536340AAAGACTTGCGTATGAAGAGCAAATTTTTCTTCTTTATTGGAATTAAATA
Cyaniris semiargus genome assembly, chromosome: 12.
LR994558.1:14278646-14278665
ACAGGTGATAATGAAACCGGTAAATGCGAA14278646AAAGACTTGCGTATGAAGAGTTTCGTAGTTCTTATATTATTATTTATACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCTTCATACGCAAGTCTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTTCATACGCAAGTCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.190 | 0.181 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTTCATACGCAAGTCTTT&k=0&no_gap=0&offset=0&limit=50
0.251 | 0.060 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGACTTGCGTATGAAGAG&k=0&no_gap=0&offset=0&limit=39
0.256 | 0.005 | cgi_end;

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