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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:27:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR4B130TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV568808.1:317-336
TCGATGCCCCAGCTGAGCCACTGCTTCTAA317CTTATAGGCCGGATGATGGACTTCCTGACGAAGATGCTGAACCGTCTCAT
RR3FE20TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD550942.1:362-381
TCGATGCCCCAGCTGAGCCACTGCTTCTAA362CTTATAGGCCGGATGATGGACTTCCTGACGAAGATGCTGAACCGTCTCAT
Raphanus sativus mRNA, clone: RSCF09C09, 5' end sequence.
FY430156.1:328-347
TCGATGCCCCAGCTGAGCCACTGCTTCTAA328CTTATAGGCCGGATGATGGACTTCCTGACGAAGATGCTGAACCGTCTCAT
Raphanus sativus mRNA, clone: RSCS02G02, 5' end sequence.
FY446679.1:548-567
TCGATGCCCCAGCTGAGCCACTGCTTCTAA548CTTATAGGCCGGATGATGGACTTCCTGACGAAGATGCTGAACCGTCTCAT
Raphanus sativus mRNA, clone: RSCS10N16, 5' end sequence.
FY449604.1:446-465
TCGATGCCCCAGCTGAGCCACTGCTTCTAA446CTTATAGGCCGGATGATGGACTTCCTGACGAAGATGCTGAACCGTCTCAT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12031.
FX657651.1:1120-1139
TCGATGCCCCAGCTGAGCCACTGCTTCTAA1120CTTATAGGCCGGATGATGGACTTCCTGACGAAGATGCTGAACCGTCTCAT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:50561317-50561336
TAAATGAAGTTGTCTACATGCAGCTTCTAA50561317CTTATAGGCCGGATGATGGACTTCCTGACGAAGATGCTGAACCGTCTCAT
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:38984138-38984157
TAATGAAGTTTGTCTACATGCAGCTTCTAA38984138CTTATAGGCCGGATGATGGACTTCCTGACGAAGATACTGAACCGTCTCAT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3814.
FX686155.1:857-876
ATGCGACTGTTCAGTCTCATCGCCAGGAAG857TCCATCATCCGGCCTATAAGTTAGGAGCAGTGGTACTGGGACATCGACAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1512.
FX730583.1:847-866
ATGAGACGGTTCAGCATCTTCGTCAGGAAG847TCCATCATCCGGCCTATAAGTTAGAAGCAGTGGCTCAGCTGGGGCATCGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18122.
FX736048.1:855-874
ATGAGACGGTTCAGTATCTTCGTCAGGAAG855TCCATCATCCGGCCTATAAGTTAGAAGCAGTGGTACTGGGACATCGACAG
TSA: Raphanus sativus RS03836 mRNA sequence.
JT788383.1:589-608
ATGCGACTGTTCAGTCTCATCGCCAGGAAG589TCCATCATCCGGCCTATAAGTTAGGAGCAGTGGTACTGGGACATCGACAG
TSA: Raphanus sativus RS03837 mRNA sequence.
JT788384.1:589-608
ATGCGACTGTTCAGTCTCATCGCCAGGAAG589TCCATCATCCGGCCTATAAGTTAGGAGCAGTGGTACTGGGACATCGACAG
TSA: Raphanus sativus RS03838 mRNA sequence.
JT788385.1:589-608
ATGCGACTGTTCAGTCTCATCGCCAGGAAG589TCCATCATCCGGCCTATAAGTTAGGAGCAGTGGTACTGGGACATCGACAG
TSA: Raphanus sativus RS03839 mRNA sequence.
JT788386.1:589-608
ATGCGACTGTTCAGTCTCATCGCCAGGAAG589TCCATCATCCGGCCTATAAGTTAGGAGCAGTGGTACTGGGACATCGACAG
TSA: Raphanus sativus RS20283 mRNA sequence.
JT804830.1:816-835
ATGAGACGGTTCAGCATCTTCGTCAGGAAG816TCCATCATCCGGCCTATAAGTTAGAAGCAGTGGCTCAGCTGGGGCATCGA
Capsella rubella clone CAP23-D18, complete sequence.
AC254604.1:11390-11409
ATGCGACGGTTCAGTGTCTTCGGCAGTCAG11390TCCATCATCCGGCCTATAAGTTAGAAGCTGAATGCAGAAAGCTCCATTAG
Capsella rubella clone CAP08-M18, complete sequence.
AC254607.1:23848-23867
ATGCGACGGTTCAGTGTCTTCGGCAGTCAG23848TCCATCATCCGGCCTATAAGTTAGAAGCTGAATGCAGAAAGCTCCATTAG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:17062996-17063015
ATGAGACGGTTCAGCATCTTCGTCAGGAAG17062996TCCATCATCCGGCCTATAAGTTAGAAGCTAAATATAGACAACTTCATTAG
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:8160433-8160452
GTGAGCCGGTTCAGTATCTTCGGCCGAAAG8160433TCCATCATCCGGCCTATAAGTTAGAAGCTGCATGTAGACAACTTCATTAG
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:14666363-14666382
ATGAGACGGTTCAGTATCTTCGTCAGGAAG14666363TCCATCATCCGGCCTATAAGTTAGAAGCTGCATGTAGACAAACTTCATTA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:17062996-17063015
ATGAGACGGTTCAGCATCTTCGTCAGGAAG17062996TCCATCATCCGGCCTATAAGTTAGAAGCTAAATATAGACAACTTCATTAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTATAGGCCGGATGATGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTATAGGCCGGATGATGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.701 | 0.693 | search_plus_done; http://172.18.8.135:50400/match?q=CTTATAGGCCGGATGATGGA&k=0&no_gap=0&offset=0&limit=50
0.917 | 0.216 | search_minus_done; http://172.18.8.135:50400/match?q=TCCATCATCCGGCCTATAAG&k=0&no_gap=0&offset=0&limit=42
0.927 | 0.009 | cgi_end;

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