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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:01:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Arvicola amphibius genome assembly, chromosome: 1.
LR862380.1:3212553-3212572
GGCTTCACAAACAAATTGTAGTTACAAACT3212553CTTGGCCATCATGCATCTGTCAGAGCTTCTCTCTACAGACACTGGTACCC
Danio aesculapii genome assembly, chromosome: 4.
LR812500.1:14163911-14163930
ATCCACACTAAAGGTCTACGTAGCAGCCAT14163911CTTGGCCATCATGCATCTGTGAATGGTTCCTCTTGGGGTCTGCTAGCCTA
Spirodela polyrhiza strain 9509 chromosome 5, partial sequence.
CP019097.1:5960414-5960433
TGTGCATTTTCTCCTAAATTCAGTCCCATT5960414CTTGGCCATCATGCATCTGTGTTCTGTATTTGAATTTATTGTCTCCATAA
Setaria viridis cultivar ME034v chromosome 4.
CP050798.1:3349815-3349834
TACCCGGAATTTGGACCGTACCTTTTCCCA3349815CTTGGCCATCATGCATCTGTGGCCACATGTGGAGGGAGAGGGAGAGGCAG
Steromphala cineraria genome assembly, chromosome: 14.
OU744733.1:23649555-23649574
TCACTATACCATATGTCCGTTGTGAAACAT23649555CTTGGCCATCATGCATCTGTGACATCACTTTACCATGTCTGTTGTGTGAC
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:10116143-10116162
ACTCTTTAACTTTTTCTTGTATTGGTTATA10116143ACAGATGCATGATGGCCAAGATGGCAGGCATCGGCAGATTGGTCGGTTTT
Pocota personata genome assembly, chromosome: 1.
OY720429.1:112631263-112631282
CCCACTTCCGCGGAAACGTTCATTGTGGAT112631263ACAGATGCATGATGGCCAAGAGAAGGTGGTTGTGTACTTCAGCAAGGTGC
Pocota personata genome assembly, chromosome: 1.
OY720429.1:166041805-166041824
ACCACTCCCGGGGAAACGTTAATTGTAGAT166041805ACAGATGCATGATGGCCAAGAGAAGGTGGTCGCGTACTTCAGCAAGGTGC
Pocota personata genome assembly, chromosome: 2.
OY720430.1:109822744-109822763
TAGTAATGTCGGGGTAGGAGCCGTACTCTA109822744ACAGATGCATGATGGCCAAGAGAAGGTGGTTGCGTACTTCAGCAAGGTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTGGCCATCATGCATCTGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGGCCATCATGCATCTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.204 | 0.195 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGGCCATCATGCATCTGT&k=0&no_gap=0&offset=0&limit=50
0.304 | 0.100 | search_minus_done; http://172.18.8.135:50400/match?q=ACAGATGCATGATGGCCAAG&k=0&no_gap=0&offset=0&limit=45
0.307 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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