GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:16:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GA__Ed0043B08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0043B08r, mRNA sequence.
BQ411825.1:92-111
TAAGAATCTGCAATCACATTGATGCCAACT92GAACTAGCCACATGATGCACACTTCACACACATGTACACACTTGCACAGA
COT_DE_F08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to unknown, mRNA sequence.
DT048771.1:68-87
TAAGAATCTGCAATCACATTGATGCCAACT68GAACTAGCCACATGATGCACACTTCACACACATGTACACACTTGCACAGA
COT_DE_F10 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence.
DT048773.1:95-114
TAAGAATCTGCAATCACATTGATGCCAACT95GAACTAGCCACATGATGCACACTTCACACACATGTACACACTTGCACAGA
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:283850-283869
TAAGAATCTGCAATCACATTGATGCCAACT283850GAACTAGCCACATGATGCACACTTCACACACATGTACACACTTGCACAGA
Gossypium herbaceum clone NBRI_C_EYT27PB01APF00 simple sequence repeat marker, mRNA sequence.
HQ527784.1:95-114
TAAGAATCTGCAATCACATTGATGCCAACT95GAACTAGCCACATGATGCACACTTCACACACATGTACACACTTGCACAGA
G.hir-stem 1141 PCR amplified cotton stem cDNA Gossypium hirsutum cDNA, mRNA sequence.
DN758637.1:511-530
TCTGTGCAAGTGTGTACATGTGTGTGAAGT511GTGCATCATGTGGCTAGTTCAGTTGGCATCAATGTGATTGCAGATTCTTA
GH_TMIRS_176_A07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW513770.1:251-270
TCTGTGCAAGTGTGTACATGTGTGTGAAGT251GTGCATCATGTGGCTAGTTCAGTTGGCATCAATGTGATTGCAGATTCTTA
2P12-A3-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG454731.1:354-373
TCTGTGCAAGTGTGTACATGTGTGTGAAGT354GTGCATCATGTGGCTAGTTCAGTTGGCATCAATGTGATTGCAGATTCTTA
E04-54E04 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK795586.1:593-612
TCTGTGCAAGTGTGTACATGTGTGTGAAGT593GTGCATCATGTGGCTAGTTCAGTTGGCATCAATGTGATTGCAGATTCTTA
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:94567693-94567712
TCTGTGCAAGTGTGTACATGTGTGTGAAGT94567693GTGCATCATGTGGCTAGTTCAGTTGGCATCAATGTGATTGCAGATTCTTA
Gossypium herbaceum clone NBRI_A2_652 simple sequence repeat marker, mRNA sequence.
HQ527790.1:377-396
TCTGTGCAAGTGTGTACATGTGTGTGAAGT377GTGCATCATGTGGCTAGTTCAGTTGGCATCAATGTGATTGCAGATTCTTA
Gossypium herbaceum clone NBRI_B_1426 simple sequence repeat marker, mRNA sequence.
HQ527791.1:122-141
TCTGTGCAAGTGTGTACATGTGTGTGAAGT122GTGCATCATGTGGCTAGTTCAGTTGGCATCAATGTGATTGCAGATTCTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAACTAGCCACATGATGCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAACTAGCCACATGATGCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.210 | 0.201 | search_plus_done; http://172.18.8.135:50400/match?q=GAACTAGCCACATGATGCAC&k=0&no_gap=0&offset=0&limit=50
0.595 | 0.385 | search_minus_done; http://172.18.8.135:50400/match?q=GTGCATCATGTGGCTAGTTC&k=0&no_gap=0&offset=0&limit=45
0.600 | 0.005 | cgi_end;

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