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データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 11:50:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene58093_XinShao mRNA sequence.
JR646891.1:630-649
AAAAGAATCTGCCCCCAGTTGGCTTTTATC630GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Fragaria x ananassa cultivar Benihoppe chromosome 8.
CP139768.1:15473461-15473480
GAAGGAATCAGCCCCAAGTTGGCTTTTATC15473461GAATCGCACTTTCACAGCCACCATTCTTCCATTTGGAAGTTTTCCAAGGT
Fragaria x ananassa cultivar Benihoppe chromosome 7.
CP139769.1:22398511-22398530
GAAGGAATCAGCCCCAAGTTGGCTTTTATC22398511GAATCGCACTTTCACAGCCACCATTCTTCCATTTGGAAGTTTTCCAAGGT
Fragaria x ananassa cultivar Benihoppe chromosome 6.
CP139770.1:15579085-15579104
GAAGGAATCAGCCCCAAGTTGGCTTTTATC15579085GAATCGCACTTTCACAGCCACCATTCTTCCATTTGGAAGTTTTCCAAGGT
Fragaria x ananassa cultivar Benihoppe chromosome 5.
CP139771.1:15706750-15706769
GAAGGAATCAGCCCCAAGTTGGCTTTTATC15706750GAATCGCACTTTCACAGCCACCATTCTTCCATTTGGAAGTTTTCCAAGGT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:27299413-27299432
AAAAGAATCTGCCCCGAGTTGGCTTTTATC27299413GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:26292542-26292561
AAAAGAATCTGCCCCGAGTTGGCTTTTATC26292542GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:26843655-26843674
AAAAGAATCTGCCCCGAGTTGGCTTTTATC26843655GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:25853772-25853791
AAAAGAATCTGCCCCGAGTTGGCTTTTATC25853772GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Potentilla anserina genome assembly, chromosome: 2.
OW176982.1:17544211-17544230
AAAAGAATCTGCCCCAAGTTGGCTTTTGTC17544211GAATCGCACTTTCACAGCCACCATTCTTCCATTGGAAAGCTTTCCTAGGT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:26317732-26317751
AAAAGAATCTGCCCCGAGTTGGCTTTTATC26317732GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:26704320-26704339
AAAAGAATCTGCCCCGAGTTGGCTTTTATC26704320GAATCGCACTTTCACAGCCACCATTTTTCCATCCGAAAGCTTTCCAAGGT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18705076-18705095
AAAAGAATCTGCCCCCAGTTGGCTTTTATC18705076GAATCGCACTTTCACAGCCACCATGTTTCCATCCGAAAGCTTTCCAAGGT
Eimeria praecox genome assembly, chromosome: 3.
OY986948.1:1702751-1702770
ACTGACGTGCAGGTGACCCTGGACACCCTA1702751GAATCGCACTTTCACAGCCAAGCACACGGGGTCACGAGGGTTCGAATCCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAATCGCACTTTCACAGCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATCGCACTTTCACAGCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.230 | 0.222 | search_plus_done; http://172.18.8.135:50400/match?q=GAATCGCACTTTCACAGCCA&k=0&no_gap=0&offset=0&limit=50
0.326 | 0.095 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCTGTGAAAGTGCGATTC&k=0&no_gap=0&offset=0&limit=36
0.326 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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