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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:09:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:13267610-13267629
TCAAACTTGGCACGAAAAGTGTGATTCCGA13267610GAATTTTCCTTTTCGCAGGTACCACCGGAAGGATCTCTTGAGAACTGTAA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:13227845-13227864
GCAAACTTGGCACGAAAAGTGTGATTCCGA13227845GAATTTTCCTTTTCGCAGGTACCCCCAAGGATCTCTTGAGAACTGTAAAA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:10115976-10115995
TCAAACTTGGCACGAAAAGTGTGATTCCGA10115976GAATTTTCCTTTTCGCAGGTACTACCCCGAAGGATCTCTTGAAAACTGTA
Maribacter sp. 1_2014MBL_MicDiv chromosome, complete genome.
CP011318.1:3776019-3776038
TCTACAATAATGCTATGTTTTTTTCTTTCT3776019GAATTTTCCTTTTCGCAGGTTAATGCAACAACGGATAATGGGAAAGTTGT
Caenorhabditis uteleia genome assembly, chromosome: X.
OY752138.1:15343491-15343510
GATACACCCAATCATTACCCCTTTTTTTCC15343491GAATTTTCCTTTTCGCAGGTCGTCTCGCCCATCTTTTCATTGTTTAGAAT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:20263570-20263589
TTACAGTTCTCAAGAGATCCTTCGGGTGGT20263570ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:31358236-31358255
TTACAGTTCTCAAGAGATCCTTCGGGTGGT31358236ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:20633552-20633571
TTACAGTTCTCAAGAGATCCTTCGGGTGGT20633552ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:19087845-19087864
TTACAGTTCTCAAGAGATCCTTCGGGTGGT19087845ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:20517557-20517576
TTACAGTTCTCAAGAGATCCTTCGGGTGGT20517557ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:20120797-20120816
TTACAGTTCTCAAGAGATCCTTCCGGTGGT20120797ACCTGCGAAAAGGAAAATTCTCGGAATCACACTTTTCGTGCCAAGTTTGA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:16700002-16700021
TTACGGTTCTCAAGAGATCCTTCGGGTGGT16700002ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:16859212-16859231
TTACAGTTCTCAAGAGATCCTTCCGGTGGT16859212ACCTGCGAAAAGGAAAATTCTCGGAATCACACTTTTCGTGCCAAGTTTGA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:20566712-20566731
TTACAGTTCTCAAGAGATCCTTCGGGTGGT20566712ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC
Malus domestica genome assembly, chromosome: 1.
OU744953.1:20135853-20135872
TTACGGTTCTCAAGAGATCCTTCGGGTGGT20135853ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:16812374-16812393
TTACAGTTCTCAAGAGATCCTTCGGGTGGT16812374ACCTGCGAAAAGGAAAATTCTCGGATCACACTTTTCGTGCCAAGTTTGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAATTTTCCTTTTCGCAGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATTTTCCTTTTCGCAGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.194 | 0.185 | search_plus_done; http://172.18.8.135:50400/match?q=GAATTTTCCTTTTCGCAGGT&k=0&no_gap=0&offset=0&limit=50
0.295 | 0.101 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTGCGAAAAGGAAAATTC&k=0&no_gap=0&offset=0&limit=45
0.303 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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