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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:18:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CGN-54943 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w17i4 5', mRNA sequence.
DV707280.1:417-440
TTGATGTCGTCTTCATACAAACATTTAACA417AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CGN-55461 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w10j2 5', mRNA sequence.
DV707671.1:417-440
TTGATGTCGTCTTCATACAAACATTTAACA417AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CGN-57967 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w18n11 5', mRNA sequence.
DV709618.1:417-440
TTGATGTCGTCTTCATACAAACATTTAACA417AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CR-EST294 Leaf EST Library of robusta coffee cultivar 'CxR' Coffea congensis x Coffea canephora cDNA clone C2G20R 3', mRNA sequence.
EG328909.1:281-304
TTGATGTCGTCTTCATACAAACATTTAACA281AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CR-EST968 Leaf EST Library of robusta coffee cultivar 'CxR' Coffea congensis x Coffea canephora cDNA clone C6G5R 3', mRNA sequence.
EG328910.1:176-199
GTTGATGTCGTCTTCATACAACATTTAACA176AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
TransId-70505 CACAT36FL Coffea arabica cDNA clone CACAT36FL_32_P03_048.F similar to Symbol: None | ubiquitin carboxyl-terminal hydrolase family protein, similar to U4/U6.U5 tri-snRNP-associated 65 kDa
GR980973.1:254-277
TTGATGTCGTCTTCATACAAACATTTAACA254AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
CA00-XX-PC1-007-C07-EC.F Coffea arabica PC1 Coffea arabica cDNA clone CA00-XX-PC1-007-C07-EC, mRNA sequence.
GT671046.1:434-457
TTGATGTCGTCTTCATACAAACATTTAACA434AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG
AFP0AAA39YE10FM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO560902.1:149-172
TTGATGTCGTCTTCATACAAACATTTAACA149AAAATGCAGCAAGTTAGATGGGTCAATCAGTTGTGTACTTGTTTCTTAGGTCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GACCCATCTAACTTGCTGCATTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GACCCATCTAACTTGCTGCATTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.377 | 0.368 | search_plus_done; http://172.18.8.135:50400/match?q=GACCCATCTAACTTGCTGCATTTT&k=0&no_gap=0&offset=0&limit=50
0.857 | 0.481 | search_minus_done; http://172.18.8.135:50400/match?q=AAAATGCAGCAAGTTAGATGGGTC&k=0&no_gap=0&offset=0&limit=50
0.863 | 0.006 | cgi_end;

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