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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:44:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium turneri isolate D10-2 chromosome D10_12.
CP032582.1:42764379-42764398
GGGTAGGAGTCCCTGTGGTCGGTGTCGTCG42764379GAGTCCCTGTGGATGGTGTTGTGCTTGTACCACTGTAAAATTAGCACAAC
Gossypium arboreum cultivar Shixiya1 chromosome 12.
CP053561.1:74410446-74410465
TTGTCGGAGTCCCTGTACTCGGAGTTGTCG74410446GAGTCCCTGTGGATGGTGTTGTGCTTGTGCCACTGTAAAATTTAGCACAA
Gossypium herbaceum isolate GPA1alz chromosome 12.
CP106705.1:96177294-96177313
TTGTCGGAGTCCCTGTACTCGGAGTTGTCG96177294GAGTCCCTGTGGATGGTGTTGTGCTTGTGCCACTGTAAAATTTAGCACAA
Gossypium bickii isolate GPG1lz chromosome 12.
CP106716.1:99740326-99740345
TTGTTGGAGTCCCTGTAGTCGGACTTGTGG99740326GAGTCCCTGTGGATGGTGTTGTGCTTGTGCCACTGTTAAATTTAGCACAA
GA__Eb0041A15f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0041A15f, mRNA sequence.
BG447196.1:486-505
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC486AACACCATCCACAGGGACTCCGACAACTCCGAATACAGGGACTCCGACAA
GR__Ea38J21.r GR__Ea Gossypium raimondii cDNA clone GR__Ea38J21 3', mRNA sequence.
CO077019.1:479-498
TTGCAGTTTTCCTTCCAGTGGTACAAGCAC479AACACCATCCACAGGGACTCCGACGACACCGACCACAGGGACGCCTACCT
GR__Ea12F19.f GR__Ea Gossypium raimondii cDNA clone GR__Ea12F19 5', mRNA sequence.
CO091718.1:482-501
TTGCAGTTTTCCTTCCAGTGGTACAAGCAC482AACACCATCCACAGGGACTCCGACGACACCGACCACAGGGACGCCTACCT
GR__Eb021M17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb021M17 3', mRNA sequence.
CO119076.1:448-467
TTGCAGTTTTCCTTCCAGTGGTACAAGCAC448AACACCATCCACAGGGACTCCGACGACACCGACCACAGGGACGCCTACCT
CM076H08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR459497.1:427-446
TTGCAGTTTTACTTCCAGTGGCACAAGCAC427AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
EST1059555 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT548915.1:477-496
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC477AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
EST1076794 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566154.1:473-492
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC473AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
UFL_650_41 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES805324.1:305-324
TTGCAGTTTTCCTTCCAGTGGTACAAGCAC305AACACCATCCACAGGGACTCCGACGACACCGACCACAGGGACGCCTACCT
UFL_648_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES807990.1:163-182
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC163AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
UFL_199_75 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES816496.1:103-122
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC103AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
UFL_364_93 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES820514.1:449-468
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC449AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
UFL_340_28 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES823631.1:486-505
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC486AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
UFL_408_36 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832073.1:478-497
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC478AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
UFL_462_44 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832823.1:449-468
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC449AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
UFL_109_62 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES844332.1:486-505
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC486AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
sg009F05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV494404.1:148-167
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC148AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
sg018E06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV494591.1:294-313
TTGCAGTTTTCCTTCCAGTGGTACAAGCAC294AACACCATCCACAGGGACTCCGACGACACCGACCACAGGGACGCCTACCT
E12-083E12 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793741.1:488-507
CAATTTATCATTCATCAATGGCACAAGCAC488AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
A01-50A01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793884.1:550-569
TTGCAGTTTTCCTTCCAGTGGTACAAGCAC550AACACCATCCACAGGGACTCCGACGACACCGACCACAGGGACGCCTACCT
ndcxf0_0016_G02.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ383866.1:500-519
TTGCAGTTTTCCTTCCAGTGGCACAAGCAC500AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
ndcxf0_0020_B06.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ384163.1:500-519
TTGCAGTTTTCCTTCCAGTGGTACAAGCAC500AACACCATCCACAGGGACTCCGACGACACCGACCACA
ndcxf0_0037_F10.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ385415.1:492-511
TTGCAGTTTTCCTTCCAGTGGTACAAGCAC492AACACCATCCACAGGGACTCCGACGACACCGA
Gossypium raimondii isolate D5-4 chromosome D5_12.
CP032564.1:11844693-11844712
GTTGTGCTAATTTTACAGTGGTACAAGCAC11844693AACACCATCCACAGGGACTCCGACGACACCGACCACAGGGACGCCTACCT
Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:13697491-13697510
TTGTGCTAAATTTTACAGTGGCACAAGCAC13697491AACACCATCCACAGGGACTCCGACAACTCCGAGTACAGGGACTCCGACAA
Gossypium rotundifolium isolate GPK201 chromosome 12.
CP106733.1:8336010-8336029
TTGTGCTAAATTTTACAGTGGCACAAGCAC8336010AACACCATCCACAGGGACTCCGACAACACCGACTACAGGGACTCCAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGTCCCTGTGGATGGTGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGTCCCTGTGGATGGTGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.101 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=GAGTCCCTGTGGATGGTGTT&k=0&no_gap=0&offset=0&limit=50
2.496 | 2.395 | search_minus_done; http://172.18.8.135:50400/match?q=AACACCATCCACAGGGACTC&k=0&no_gap=0&offset=0&limit=46
2.513 | 0.017 | cgi_end;

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