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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 16:12:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

A014P67U Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA 5', mRNA sequence.
AI162252.1:98-119
GGGTTGTTTCTAGATCTACTGCGGGAAAGA98GATCTCCTCCAACACCAGAAAATATTGATAGAAAGTTGCCTAGCTCTAGGTC
Populus euphratica EST, clone P0001600012H06F1.
AJ771974.1:152-173
AGGTTGTTTCTAGATCTACTGCAGGAAAGA152GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTC
WS02524.B21_C01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_C01 3', mRNA sequence.
DT483984.1:383-404
AGGTTGTTTCTAGATCTACTGTAGGAAAGA383GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGTCTGGCTCTAGATC
Populus trichocarpa clone POP019-I06, complete sequence.
AC216596.1:3232-3253
AGGTTGTTTCTAGATCTACTGCAGGAAAGA3232GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTC
Populus nigra genome assembly, chromosome: 1.
OX637672.1:44172298-44172319
AGGTTGTTTCTAGATCTACTGCAGGAAAGA44172298GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTC
Populus nigra genome assembly, chromosome: 8.
OX637679.1:17071863-17071884
GGGTTGTTTCTAGATCTACTGCAGGAAAGA17071863GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTC
WS02524.BR_C01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_C01 5', mRNA sequence.
DT478897.1:515-536
ATCTAGAGCCCGACATTCTTTCTATCAATA515TTTTCTGGTGTTGGAGGAGATCTCTTTCCTACAGTAGATTCTAGAAACAACC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATCTCCTCCAACACCAGAAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATCTCCTCCAACACCAGAAAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.342 | 0.333 | search_plus_done; http://172.18.8.135:50400/match?q=GATCTCCTCCAACACCAGAAAA&k=0&no_gap=0&offset=0&limit=50
0.461 | 0.119 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTCTGGTGTTGGAGGAGATC&k=0&no_gap=0&offset=0&limit=44
0.462 | 0.001 | cgi_end;

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