GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:13:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GQ02819.B7_G13 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02819_G13 5', mRNA sequence.
EX322580.1:246-265
TCTTTGGCAGAAGAAGAAGTTCGTCCTGAA246GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCTAACTCATCCAAACG
Cryptomeria japonica cDNA, clone: CFFL028_C22, 3'end sequence.
FY290277.1:105-124
TCATTGGCTGAAGAAGAAGTACCTCCTGAA105GATGTTGTTTTTCACAAGTTTTATATGGCAAAGAGCAGCTCATCAAAACG
Cryptomeria japonica cDNA, clone: CSFL025_D06, 3'end sequence.
FY780150.1:34-53
TTCATTGGCTGAAGAAGAAGTACCTCTGAA34GATGTTGTTTTTCACAAGTTTTATATGGCAAAGAGCAGCTCATCAAAACG
PCO0140.CR_A13 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0140_A13 3', mRNA sequence.
GT240809.1:814-833
TCTTTGGCAGAAGAAGAAGTTCGTCCCGAA814GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCCAACTCATCCAAACG
PCO021.CR_M05 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO021_M05 3', mRNA sequence.
GT258430.1:809-828
TCTTTGGCAGAAGAAGAAGTTCGTCCCGAA809GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCCAACTCATCCAAACG
PCO023.CR_G10 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO023_G10 3', mRNA sequence.
GT259688.1:25-44
GCAGAAGAAGAAGTTCGTCCCGAA25GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCCAACTCATCCAAACG
TSA: Cryptomeria japonica mRNA, contig: CSFL025_D06, expressed in reproductive shoots.
FX347065.1:2875-2894
TCATTGGCTGAAGAAGAAGTACCTCCTGAA2875GATGTTGTTTTTCACAAGTTTTATATGGCAAAGAGCAGCTCATCAAAACG
Picea glauca clone GQ02819_G13 mRNA sequence.
BT105177.1:246-265
TCTTTGGCAGAAGAAGAAGTTCGTCCTGAA246GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCTAACTCATCCAAACG
Picea glauca clone GQ03514_D22 mRNA sequence.
BT114419.1:1835-1854
TCTTTGGCAGAAGAAGAAGTTCGTCCTGAA1835GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCTAACTCATCCAAACG
Chamaecyparis hodginsii clone c10813_g1_i1 microsatellite sequence.
KY010838.1:89-108
TCATTGGCTGAAGAAGAAGTACCTCCTGAA89GATGTTGTTTTTCACAAGTTTTATATGGCAAAGAGCAGCTCGTCAAAACG
GQ02819.SP6_G13 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02819_G13 3', mRNA sequence.
EX322940.1:719-738
CGTTTGGATGAGTTAGCCTTTGCCAAATAA719AACTTGTGAAAAACAACATCTTCAGGACGAACTTCTTCTTCTGCCAAAGA
GQ03514.SP6.r_D22 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03514_D22 3', mRNA sequence.
GO365373.1:43-62
CGTTTGGATGAGTTAGCCTTTGCCAAATAA43AACTTGTGAAAAACAACATCTTCAGGACGAACTTCTTCTTCTGCCAAAGA
PBA0126.CR_F18 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0126_F18 3', mRNA sequence.
GW756139.1:53-72
CGTTTGGATGAGTTGGCCTTTGCCAAATAA53AACTTGTGAAAAACAACATCTTCGGGACGAACTTCTTCTTCTGCCAAAGA
TSA: Larix kaempferi PEMC22552.Lakaproemb mRNA sequence.
JR153034.1:388-407
CGTTTGGATGAGTTAGCTTTTGCCACATAA388AACTTGTGAAAAACAACATCTTCAGGACGAACATCTTCTTCTGCCAAAGA
Sphagnum tenellum genome assembly, chromosome: 15.
OY998156.1:1530793-1530812
CTTCTACTCTTCATGCTCTTTGTTTGGTAA1530793AACTTGTGAAAAACAACATCATCAGGAGCAACCTCACTTTCATCTAGGGC
Phallusia mammillata mRNA for extracellular matrix protein FRAS1 (Fras1-002 gene).
LR785266.1:6599-6618
TTAACCGCGATCCAAACGTTGGTCAACTTC6599AACTTGTGAAAAACAACATCGTTACCAATATTTCAGCGTCTAGGACACGA
Lacanobia oleracea genome assembly, chromosome: 21.
OX493406.1:8806747-8806766
TTAGACCAAGACATCATAAAACGAGTAATA8806747AACTTGTGAAAAACAACATCTTGCAGCAGTGTTCCGAGGCTCAATAATTT
Oxytorus armatus genome assembly, chromosome: 6.
OY253749.1:13369094-13369113
TCTCGAGAAATTATTCAATCCAACGATCTT13369094AACTTGTGAAAAACAACATCGGAATCGATTTAACTTCTGCGAAACATTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATGTTGTTTTTCACAAGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGTTGTTTTTCACAAGTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.896 | 0.888 | search_plus_done; http://172.18.8.135:50400/match?q=GATGTTGTTTTTCACAAGTT&k=0&no_gap=0&offset=0&limit=50
1.311 | 0.415 | search_minus_done; http://172.18.8.135:50400/match?q=AACTTGTGAAAAACAACATC&k=0&no_gap=0&offset=0&limit=40
1.317 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).