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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-17 02:41:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB037H08F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB037H08, genomic survey sequence.
DX038346.1:48-67
GTCTTGAACCAACCTGCAAAAGTATTCCCT48GCAAGACGTATGACGGTTCATGGCTGAGACAGAGCATACTACCACACCTA
Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH010M08, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC172873.1:13731-13750
GTCTTGAACCAACCTGCAAAAGTATTCCCT13731GCAAGACGTATGACGGTTCATGGCTGAGACAGAGCATACTACCACACCTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB012F17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189226.2:136607-136626
GTCTTGAACCAACCTGCAAAAGTATTCCCT136607GCAAGACGTATGACGGTTCATGGCTGAGACAGAGCATACTACCACACCTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH138P04, complete sequence.
AC155338.1:88203-88222
GTCTTGAACCAACCTGCAAAAGTATTCCCT88203GCAAGACGTATGACGGTTCATGGCTGAGACAGAGCATACTACCACACCTA
Brassica oleracea var. viridis mRNA, clone: KALE-120C01, 3' end sequence.
DK561053.1:106-125
TAGGTGTGGTAGTATGCTCTGTCTCAGACA106TGAACCGTCATACGTCTTGCAGAGAATACTTTTGCAGGTTGGTTCAAGAC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:68155575-68155594
TAGGTGTGGTAGTATGCTCTGTCTCAGACA68155575TGAACCGTCATACGTCTTGCAGGGAATACTTTTGCAGGTTGGTTCAAGAC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:52116619-52116638
TAGGTGTGGTAGTATGCTCTGTCTCAGCCA52116619TGAACCGTCATACGTCTTGCAGGGAATACTTTTGCAGGTTGGTTCAAGAC
Brassica rapa genome, scaffold: A09.
LR031568.1:56186837-56186856
TAGGTGTGGTAGTATGCTCTGTCTCAGCCA56186837TGAACCGTCATACGTCTTGCAGGGAATACTTTTGCAGGTTGGTTCAAGAC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:66710993-66711012
TAGGTGTGGTAGTATGCTCTGTCTCAGCCA66710993TGAACCGTCATACGTCTTGCAGGGAATACTTTTGCAGGTTGGTTCAAGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAAGACGTATGACGGTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAGACGTATGACGGTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.368 | 0.359 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAGACGTATGACGGTTCA&k=0&no_gap=0&offset=0&limit=50
0.509 | 0.141 | search_minus_done; http://172.18.8.135:50400/match?q=TGAACCGTCATACGTCTTGC&k=0&no_gap=0&offset=0&limit=46
0.513 | 0.004 | cgi_end;

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