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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:38:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

69091.1 Mixed Floral Solanum tuberosum cDNA clone 69091 5', mRNA sequence.
CV502682.1:182-201
GCTGCTACTGATACTTCAGAAGTTGCCAAG182GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT
TSA: Ipomoea batatas Contig_7523.Ipbalsr mRNA sequence.
JP112111.1:706-725
AGCACTACTGATACTTCTGAAGTTGCTAAG706GCATATGGTGGAGGTGGTTCTCCAAGTTCAAGCTCATTCATAATTCGGAT
CHO_OF3874xg02r1.ab1 CHO_OF3 Nicotiana tabacum genomic 3', genomic survey sequence.
FH146620.1:242-261
CCACAAATGTTTTGCTTCTTTAACATGCAG242GCATATGGTGGAGGTGGTTCTCCTAGTTCCAGCTCATTTATAATTCGGAT
Solanum lycopersicum DNA, clone: MTBAC069L03_SP6.
FT269081.1:395-414
GACAAAGACTTTGCTTCTTTAAACATGCAG395GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT
Solanum lycopersicum cDNA, clone: LEFL3144E12, HTC in root.
AK329445.1:1103-1122
GCTGCTACTGATACTTCAGAAGTTGCCAAG1103GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT
Eustoma grandiflorum DNA, chromosome 4, draft genome sequence.
AP025043.1:37221368-37221387
TTGGATCTATGACAAACCACCAACATGTAG37221368GCATATGGTGGAGGTGGTTCACCAAGTTCTAGTTCTTTCATCATTCGGAT
Solanum lycopersicum Micro-Tom DNA, chromosome 1, draft genome sequence.
AP028935.1:90173035-90173054
GACAAAGACTTTGCTTCTTTAAACATGCAG90173035GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT
Solanum lycopersicum cultivar I-3 chromosome 1.
CP023757.1:94150135-94150154
GACAAAGACTTTGCTTCTTTAAACATGCAG94150135GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT
Solanum tuberosum cultivar P8 chromosome 1.
CP046688.1:82822598-82822617
AACRAATACTTTGCTTCTTTAAACATGCAG82822598GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT
Solanum tuberosum cultivar MSH/14-112 chromosome 1.
CP046702.1:82823363-82823382
AACRAATACTTTGCTTCTTTAAACATGCAG82823363GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT
Solanum pinnatisectum cultivar CGN17745 chromosome 1.
CP047567.1:82795184-82795203
AACGAATACTTTGCTTCTTTAAACATGCAG82795184GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT
Solanum tuberosum cultivar Solyntus chromosome 1.
CP055234.1:53965928-53965947
AACAAATACTTTGCTTCTTTAAACATGCAG53965928GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT
Vitis x doaniana cultivar PI 588149 chromosome 3.
CP128329.1:10211142-10211161
AGCAAGTTTTCTTTGCACATAAATGTGAAG10211142GCATATGGTGGAGGTGGTTCCCCAAGTTCTAGCTCCTTTATAATAAGGAT
Solanum verrucosum cultivar 11H23 chromosome 1.
CP133612.1:79027629-79027648
AACAAATACTTTGCTTCTTTAAACATGCAG79027629GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT
Solanum pennellii chromosome ch01, complete genome.
HG975440.1:104797936-104797955
GACAAAGACTTTGCTTCTTTAAACATGCAG104797936GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT
Solanum lycopersicum chromosome ch01, complete genome.
HG975513.1:85910612-85910631
GACAAAGACTTTGCTTCTTTAAACATGCAG85910612GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT
Solanum lycopersicum genome assembly, chromosome: 1.
OU640344.1:91979097-91979116
GACAAAGACTTTGCTTCTTTAAACATGCAG91979097GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT
Misopates orontium genome assembly, chromosome: 4.
OX326949.1:36776955-36776974
TTTTAGGTGCGTATATTTTTTAACCTGTAG36776955GCATATGGTGGAGGTGGTTCCGCAAGTTCCAGCTCCTTTATCATTCGTAT
Hedera helix genome assembly, chromosome: 24.
OX359287.1:30786224-30786243
TTTTCTATCTTTCCATCTTTAATCATGAAG30786224GCATATGGTGGAGGTGGTTCCCCCTGTTCCAGCTCCTTCATAATTCGAAT
Linaria vulgaris genome assembly, chromosome: 6.
OX415254.1:75791876-75791895
TTTAGAGTAAATGTATATTTGAACCTGCAG75791876GCATATGGTGGAGGTGGTTCCCCTGGTTCCAGCTCCTTTATCATTCGTAT
Ilex aquifolium genome assembly, chromosome: 5.
OX637395.1:38302931-38302950
TCAGTTTACTTAGCATGTGGAAACATGAAG38302931GCATATGGTGGAGGTGGTTCCCCATGTTATAGCTCCTTTATAATAAGGAT
Verbascum thapsus genome assembly, chromosome: 1.
OY770104.1:1893778-1893797
AAATTTATTTTTGGGTATTAAAACCTGTAG1893778GCATATGGTGGAGGTGGTTCCCCAAGTTCCAGTTCATTTATCATTCGCAT
Geranium rotundifolium genome assembly, chromosome: 13.
OY987323.1:2991804-2991823
GCAAGTTTCGTTACATCTCTAAACATGAAG2991804GCATATGGTGGAGGTGGTTCGCCAGGCTCTAGCTCTTTTATAATAAGGAT
Erodium maritimum genome assembly, chromosome: 9.
OY997596.1:62521875-62521894
GCAAGTTTCTTTGCATCTCCAATCATGAAG62521875GCATATGGTGGAGGTGGTTCACCAGGTTCTAGCTCCTTCATTATAAGGAT
CHO_OF235xb21f1.ab1 CHO_OF Nicotiana tabacum genomic 5', genomic survey sequence.
ET928166.1:343-362
ATCCGAATTATAAATGAGCTGGAACTAGGA343GAACCACCTCCACCATATGCCTGCATGTTAAAGAAGCAAAACATTTGTGG
Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-156i17 map 1, complete sequence.
AC239238.8:38371-38390
ATCCGAATTATAAATGAGCTAGAACAAGGA38371GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAAGTCTTTGTC
Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-100k15 map 1, complete sequence.
AC240855.7:66918-66937
ATCCGAATTATAAATGAGCTAGAACAAGGA66918GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAAGTCTTTGTC
Ipomoea trifida cultivar NCNSP0306 chromosome 9.
CP025652.1:1373476-1373495
ATCCGAATTATGAATGAGCTTGAACTTGGA1373476GAACCACCTCCACCATATGCCTTAATGTTTGAAGAGAAATGAAAATCCGT
Ipomoea triloba cultivar NCNSP0323 chromosome 9.
CP025668.1:1820720-1820739
ATCCGAATTATGAATGAGCTTGAACTTGGA1820720GAACCACCTCCACCATATGCCTTAATGTTTGAAGAGAAATGAAAATCCAT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:140154689-140154708
ATGCGAATTATAAATGAGCTAGAACTAGGA140154689GAACCACCTCCACCATATGCCTGCATGGTTAAAGAAGCAAAGTATCTGTT
Vitis x doaniana cultivar PI 588149 chromosome 3.
CP128348.1:9899252-9899271
ATCCTTATTATAAAGGAGCTAGAACTTGGG9899252GAACCACCTCCACCATATGCCTTCACATTTATGTGCAAAGAAAACTTGCT
Solanum dulcamara genome assembly, chromosome: 4.
OX359255.1:5199374-5199393
ATCCGAATTATAAATGAGCTAGAACTAGGA5199374GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAATTATTTGTT
Solanum dulcamara genome assembly, chromosome: 4.
OX359255.1:5213747-5213766
ATCCGAATTATAAATGAGCTAGAACTAGGA5213747GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAATTATTTGTT
Solanum dulcamara genome assembly, chromosome: 4.
OX359255.1:5228215-5228234
ATCCGAATTATAAATGAGCTAGAACTAGGA5228215GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAATTATTTGTT
Primula veris genome assembly, chromosome: 4.
OY821743.1:2438652-2438671
ATCCTAATAATAAAGGAGCTCGAACTCGGT2438652GAACCACCTCCACCATATGCCTTTATATAAAAAAAGGGATGTAGAATGTA
Primula vulgaris genome assembly, chromosome: 5.
OY987216.1:1948097-1948116
ATCCTAATAATAAAGGAGCTCGAACTCGGT1948097GAACCACCTCCACCATATGCCTTTATATAAAATAAGGGATGTAGAATGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCATATGGTGGAGGTGGTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATATGGTGGAGGTGGTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.313 | 0.304 | search_plus_done; http://172.18.8.135:50400/match?q=GCATATGGTGGAGGTGGTTC&k=0&no_gap=0&offset=0&limit=50
0.457 | 0.144 | search_minus_done; http://172.18.8.135:50400/match?q=GAACCACCTCCACCATATGC&k=0&no_gap=0&offset=0&limit=26
0.464 | 0.008 | cgi_end;

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