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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:44:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BR085533 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-015E10 5', mRNA sequence.
EX099243.1:132-151
CTCTGAAAAAACTCAAAAATCACACACAGA132GCGCGAGAAACTTTGATTTCACCTCTAAAAATTGCTCAGGAATGGCGCTT
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:23002704-23002723
CTCTGAAAAAACTCAAAAATCACACACAGA23002704GCGCGAGAAACTTTGATTTCACCTCTAAAAATTGCTCAGGAATGGCGCTT
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:27069085-27069104
TTCTAAAAAAAACTCAAAATCACACACAGA27069085GCGCGAGAAACTTTGATTTCACCTCTAAATTTTTTTATCAAGAATGGCGC
Diabrotica virgifera virgifera genome assembly, chromosome: 5.
OU830628.1:99556128-99556147
CATATACAATTTATTGTCAAGGCTGGGGAG99556128GCGCGAGAAACTTTGATTTCAACAAAAGGGGGCGTGGTACAAAAAAGTTT
Caradrina clavipalpis genome assembly, chromosome: 13.
OW052100.1:761454-761473
GCTCAAAAGAAACTTCGCTGCGTCCCTCAA761454GCGCGAGAAACTTTGATTTCGTTATAATTGGTGTGAATTTAACAAATCAT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_26769.
FX670122.1:1457-1476
GCGCCATTCTTGATAAAAAAATTTAGAGGT1457GAAATCAAAGTTTCTCGCGCTCTGTGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5934.
FX700743.1:1401-1420
AAGCGCCATTCCTGAGCAATTTTTAGAGGT1401GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Brassica napus genome assembly, chromosome: A10.
HG994364.1:3547676-3547695
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3547676GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Brassica rapa genome, scaffold: A10.
LR031577.1:3731665-3731684
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3731665GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:6093074-6093093
GCGCCATTCTTGATAAAAAAATTTAGAGGT6093074GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTGAGTTTTTTTTAGAA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:3762997-3763016
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3762997GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Diabrotica balteata genome assembly, chromosome: 9.
OU898284.1:114670518-114670537
CAAACTTTTTTGTACCACGCCCCCTTTGTT114670518GAAATCAAAGTTTCTCGCGCCCCCTCTTAACAATAAATTGTGTGGGCCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCGCGAGAAACTTTGATTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGCGAGAAACTTTGATTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.235 | 0.226 | search_plus_done; http://172.18.8.135:50400/match?q=GCGCGAGAAACTTTGATTTC&k=0&no_gap=0&offset=0&limit=50
0.365 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=GAAATCAAAGTTTCTCGCGC&k=0&no_gap=0&offset=0&limit=45
0.370 | 0.005 | cgi_end;

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