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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 11:41:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-087H10, 3' end sequence.
DK548579.1:431-449
CTGGTAAGATACTGGGATCTCTCGGCAGCT431GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
Brassica oleracea var. viridis mRNA, clone: KALE-106I17, 3' end sequence.
DK555877.1:435-453
CTGGTAAGATACTGGGATCTCTCGGCAGCT435GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
BR120965 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-80D09 5', mRNA sequence.
EX137135.1:39-57
CTGGTAAGATACTGGGATCTCTCGGCAGCT39GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
BNAOV1GH_T3_069_F05_14SEPT2007_037 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR447723.1:47-65
CTGGTAAGATACTGGGATCTCTCGGCAGCT47GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2180.
FX754129.1:1087-1105
CTGGTAAGATACTGGGATCTCTCGGCAGCT1087GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:44303600-44303618
CTGGTAAGATACTGGGATCTCTCGGCAGCT44303600GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
Brassica rapa genome, scaffold: A09.
LR031568.1:43434413-43434431
CTGGTAAGATACTGGGATCTCTCGGCAGCT43434413GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:53884077-53884095
CTGGTAAGATACTGGGATCTCTCGGCAGCT53884077GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7281.
FX710837.1:317-335
TGGGTTGAAGATGACAAAGCTAAAGTTGTG317GGAGACTAAGATGCAGCGCAGCTGCCGAGAGATCCCAGTATCTTACCAG
BOGHS43TR BOGH Brassica oleracea genomic clone BOGHS43, genomic survey sequence.
BH480845.1:386-404
TGGGTTGAAGATGACAAAGCTAAAGTTGTG386GGAGACTAAGATGCAGCGCAGCTGCCGAGAGATCCCAGTATCTTACCAG
Brassica napus genome assembly, chromosome: C05.
HG994369.1:14902745-14902763
TGGGTTGAAGATGACAAAGCTAAAGTTGTG14902745GGAGACTAAGATGCAGCGCAGCTGCCGAGAGATCCCAGTATCTTACCAG
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:14451606-14451624
TGGGTTGAAGATGACAAAGCTAAAGTTGTG14451606GGAGACTAAGATGCAGCGCAGCTGCCGAGAGATCCCAGTATCTTACCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCGCTGCATCTTAGTCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGCTGCATCTTAGTCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.402 | 0.394 | search_plus_done; http://172.18.8.135:50400/match?q=GCGCTGCATCTTAGTCTCC&k=0&no_gap=0&offset=0&limit=50
0.530 | 0.128 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGACTAAGATGCAGCGC&k=0&no_gap=0&offset=0&limit=42
0.533 | 0.003 | cgi_end;

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