GGGenome | Results

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2025-04-06 06:53:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

CGN-26660 Leaf Coffea canephora cDNA clone cccl1f23 5', mRNA sequence.
DV685362.1:489-507

TGGTCTTAATTCCTCTTCCGGCGGGGAATG489GCGGCCATCCTTGTCTTCGATTTGAGAAGACAACGTTTTACATGAGAGG

CGN-26757 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w17c4 5', mRNA sequence.
DV685439.1:57-75

TGGTCGTAATTCCTCTTCCGGCGGGGAATG57GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CGN-29884 Leaf Coffea canephora cDNA clone cccl4c6 5', mRNA sequence.
DV687771.1:229-247

TGGTCGTAATTCCTCTTCCGGCGGGGAATG229GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CGN-30525 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w17c4 5', mRNA sequence.
DV688113.1:64-82

TGGTCGTAATTCCTCTTCCGGCGGGGAATG64GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CGN-32862 Leaf Coffea canephora cDNA clone cccl18e1 5', mRNA sequence.
DV689714.1:127-145

TGGTCGTAATTCCTCTTCCGGCGGGGAATG127GCGGCCATCCTTGTCTTCGATTTGTGAAGACTACGTTTTACATGAGAGG

CGN-33298 Leaf Coffea canephora cDNA clone cccl18e14 5', mRNA sequence.
DV690042.1:361-379

TGGTCGTAATTCCTCTTCCGGCGGGGAATG361GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CGN-36069 Leaf Coffea canephora cDNA clone cccl26c2 5', mRNA sequence.
DV692210.1:502-520

TGGTCATAATTCCTCTTCCGGGGGGGAATG502GCGGCCATCCTTGTCTTCGATTTGAGAAGACAACGTTTTACATGAGAGG

CGN-36273 Leaf Coffea canephora cDNA clone cccl16o1 5', mRNA sequence.
DV692367.1:160-178

TGGTCATAATTCCTCTTCCGGCGGGGAATG160GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CGN-61887 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w30n16 5', mRNA sequence.
DV712755.1:501-519

TGGTCGTAATTCCTCTTCCGGCGGGGAATG501GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

TransId-86392 CACAT36L Coffea arabica cDNA clone CACAT36L_12_G02_023.F, mRNA sequence.
GR986074.1:491-509

TGGTCGTAATTCCTCTTCCGGCGGGGAATG491GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CC00-XX-SH3-039-A11-EM.F Coffea canephora SH3 Coffea canephora cDNA clone CC00-XX-SH3-039-A11-EM, mRNA sequence.
GT647314.1:194-212

TGGTCGTAATTCCTCTTCCGGCGGGGAATG194GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CA00-XX-IC1-028-C04-EC.F Coffea arabica IC1 Coffea arabica cDNA clone CA00-XX-IC1-028-C04-EC, mRNA sequence.
GW435315.1:479-497

TGGTCGTAATTCCTCTTCCGGCGGGGAATG479GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CA00-XX-SH2-061-B08-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-061-B08-EM, mRNA sequence.
GW440861.1:467-485

TGGTCGTAATTCCTCTTCCGGCGGGGAATG467GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CA00-XX-SH2-024-H12-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-024-H12-EM, mRNA sequence.
GW441504.1:135-153

TGGTCGTAATTCCTCTTCCGGCGGGGAATG135GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CCES34 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110685.1:497-515

TGGTCGTAATTCCTCTTCCGGCGGGGAATG497GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

CCES35 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110686.1:497-515

TGGTCGTAATTCCTCTTCCGGCGGGGAATG497GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG

Bradyrhizobium elkanii strain K02K-Be chromosome, complete genome.
CP126002.1:236236-236254

CGCGCCGAGGCCCGCCCGCGAATCGTAGAG236236GCGGCCATCCTTGTCTTCGGAGGACTTGATTGATTTGATCGCATCGGGG

Bradyrhizobium elkanii strain K03D-Be chromosome, complete genome.
CP126029.1:238329-238347

CGCGCCGAGGCCCGCCCGCGAATCGTAGAG238329GCGGCCATCCTTGTCTTCGGAGGATTTGATCGACTTGATCGCATCGGGA

Meconema thalassinum genome assembly, chromosome: X.
OX336389.2:156295153-156295171

TTGGCCGATTAGATGGTCCCGGTCATATTG156295153GCGGCCATCCTTGTCTTCGGAACGTGTTGATTAATTTCTAAGATTCCTC

uncultured Cohaesibacter sp. isolate c11f5eba-291c-42f9-ba67-a1d324372fbb genome assembly, chromosome: 22.
OY759870.1:156924-156942

GACCCACGGCGCGCTCTATGCGTGGGAATT156924CGAAGACAAGGATGGCCGCGAACTCCGCGTCAAGGTTCAGGGGCAGGTG

Rhizoctonia solani strain AG-1 IA isolate XN chromosome 6.
CP059663.1:1017704-1017722

TCATGTCCAGCAGCTCATGTACCACCAAGC1017704CGAAGACAAGGATGGCCGCAAGACCCTCCGCGCGCCGTTGTTTTTCACC

Rhizoctonia solani strain AG1-IA_HG81 chromosome 6.
CP102648.1:1143963-1143981

TCATGTCCAGCAGCTCATGTACCACCAAGC1143963CGAAGACAAGGATGGCCGCAAGACCCTCCGCGCGCCGTTGTTTTTCACC

Streptomyces sp. NBC_00180 strain NBC 00180 chromosome, complete genome.
CP108140.1:8973694-8973712

ACAGCGCGGCAGGCGCGCCCGTGGCCGAAT8973694CGAAGACAAGGATGGCCGCTTGATGGGTCGGCAATGGAGTCCCGGCATT

Streptomyces sp. NBC_01017 chromosome, complete genome.
CP108683.1:10287345-10287363

GCAGCGCGGCAGGCGCACCGGTGGCCGAAT10287345CGAAGACAAGGATGGCCGCTTGATGGGTCGGCAGTGGAGTTCCGGAATT

Streptomyces sp. NBC 01614 strain NBC_01614 chromosome, complete genome.
CP109302.1:10325771-10325789

ACAGCGCGGCAGGCGCGCCCGTGGCCGAAT10325771CGAAGACAAGGATGGCCGCTTGATGGGTCGGCAATGGAGTCCCGGCATT

Bradyrhizobium pachyrhizi strain CB1923 chromosome, complete genome.
CP121667.1:8622333-8622351

CCCTGACGCGATCAAGTCAATCAAGTCCTC8622333CGAAGACAAGGATGGCCGCCTCTACGATTCGCGGGCGGGCCTCGGCGCG

Bradyrhizobium elkanii strain K03I-Be chromosome, complete genome.
CP126003.1:9014511-9014529

CCCCGATGCGATCAAATCAATCAAGTCCTC9014511CGAAGACAAGGATGGCCGCCTCTACGATTCGCGGGCGGGCCTCGGCGCG

Bradyrhizobium elkanii USDA 94 chromosome, complete genome.
CP126007.1:9246444-9246462

TCCCGATGCGATCAAGTCGATCAAATCCTC9246444CGAAGACAAGGATGGCCGCCTCTACGATTCGCGGGCGGGCCTCGGCGCG

Bradyrhizobium elkanii strain S15H-Be chromosome, complete genome.
CP126036.1:9475648-9475666

TCCCGATGCGATCAAGTCGATCAAATCCTC9475648CGAAGACAAGGATGGCCGCCTCTACGATTCACGGGCGGGTCTCGGCGCG

Sinorhizobium medicae strain ml42 chromosome, complete genome.
CP140900.1:872244-872262

CCGCGACCGCGCAGAAGACCGAGCCTGCGA872244CGAAGACAAGGATGGCCGCGCGGAAGATGCGTTTGGCGCCGAACCGATC

Hartmannibacter diazotrophicus strain E19T genome assembly, chromosome: 1.
LT960614.1:4753963-4753981

CCGCCGAGCGCGTGGCCCAGTCCGCCAGCG4753963CGAAGACAAGGATGGCCGCGCCGCCGCCGATGGCCGCGCCCTTGATGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.878 | 0.869 | search_plus_done; http://172.18.8.135:50400/match?q=GCGGCCATCCTTGTCTTCG&k=0&no_gap=0&offset=0&limit=50
0.936 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=CGAAGACAAGGATGGCCGC&k=0&no_gap=0&offset=0&limit=31
0.944 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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