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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:40:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB032C14F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB032C14, genomic survey sequence.
DX034359.1:295-314
GAGGTTGAATTGACTCTCGGCACAGAAAAC295GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTTATTGTTTATA
KBrB130H03R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB130H03, genomic survey sequence.
ED537270.1:288-307
GAGGTTGAATTGACTCTCGGCACAGAAAAC288GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTTATTGTTTATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH095B11, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC241164.1:63234-63253
GAGGTTGAATTGACTCTCGGCACAGAAAAC63234GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTTATTGTTTATA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:9981614-9981633
GAGGTTGAATTGACTCTCGGCACAGAAAAC9981614GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTGATTGTTTATA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:9958473-9958492
GAGGTTGAATTGACTCTCGGCACAGAAAAC9958473GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTGATTGTTTATA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:13974184-13974203
AAGGTTGAATTGACTCTCGGCACAGAAAAC13974184GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTTGATTATATACAAAT
Brassica rapa genome, scaffold: A03.
LR031572.1:9815569-9815588
GAGGTTGAATTGACTCTCGGCACAGAAAAC9815569GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTGATTGTTTATA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:14036975-14036994
AAGGTTGAATTGACTCTCGGCACAGAAAAC14036975GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTTGATTATATACAAAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:9938197-9938216
GAGGTTGAATTGACTCTCGGCACAGAAAAC9938197GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTGATTGTTTATA
Heterobilharzia americana genome assembly, chromosome: 3.
OX104129.1:46905003-46905022
CAAACCTCCTTGATTCTTTTCCCCGATCCA46905003GCGTTTCGTCCTCTTCTCACAGCTCCTCACTGTTTGTTGCATGATCCAGT
40-E022825-021-016-O10-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022O1016Q, mRNA sequence.
CX192734.1:62-81
ATTTGTATATAATCAAATCACACAAGACTC62GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTT
63JKCOT5_T3_020_B02_22JAN2005_014 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY021570.1:368-387
TATAAACAATCAATCAATCACACAAGACTC368GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
53COT2_T3_016_F12_03SEP2004_086 Brassica napus 36hr germinating seed library 53COT2 Brassica napus cDNA 5', mRNA sequence.
DY025503.1:88-107
TATAAACAATCAATCAATCACACAAGACTC88GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
44JK5DM_UP_040_C02_01JUL2006_012 Brassica napus 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES985446.1:76-95
ATTTGTATATAATCAAATCACACAAGACTC76GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTT
BR028714 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-126G06 5', mRNA sequence.
EX044070.1:46-65
TATAAACAATAAATCAATCACACAAGACTC46GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
BR085365 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-013C09 5', mRNA sequence.
EX099075.1:100-119
TATAAACAATAAATCAATCACACAAGACTC100GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
BNAPO3GH_T3_003_C01_13JULY2007_011 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR456005.1:12-31
ACACAAGACTC12GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_20861.
FX703617.1:100-119
TATAAACAATAAATCAATCACACAAGACTC100GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_31052.
FX739256.1:98-117
TATAAACAATAAATCAATCACACAAGACTC98GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB032C14, complete sequence.
AC189306.2:104638-104657
TATAAACAATAAATCAATCACACAAGACTC104638GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:65341686-65341705
ATTTGTATATAATCAAATCACACAAGACTC65341686GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTT
Brassica napus microsatellite Y5F115-1 sequence.
JX131202.1:109-128
CATTTGTATATAATCAATCACACAAGACTC109GTGAGAAGAGGACGAAACGC
Eumerus sabulonum genome assembly, chromosome: 1.
OX645060.1:10359409-10359428
TTTATTTCTGGACTTTGTTTGGCTTTTATT10359409GTGAGAAGAGGACGAAACGCAGGATATTCGAATGGCGGAAACTGTTTAAC
Sisyra nigra genome assembly, chromosome: 1.
OY292313.1:3663173-3663192
TCTCGATACGATCTGTCTCTTGAGAAACGC3663173GTGAGAAGAGGACGAAACGCGAGAATTAACGCCGTGTAGTTTGCGGGGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGTTTCGTCCTCTTCTCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGTTTCGTCCTCTTCTCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.163 | 0.154 | search_plus_done; http://172.18.8.135:50400/match?q=GCGTTTCGTCCTCTTCTCAC&k=0&no_gap=0&offset=0&limit=50
0.933 | 0.770 | search_minus_done; http://172.18.8.135:50400/match?q=GTGAGAAGAGGACGAAACGC&k=0&no_gap=0&offset=0&limit=40
0.942 | 0.010 | cgi_end;

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