GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:39:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sambucus nigra genome assembly, chromosome: 15.
OX422221.1:472387397-472387418
AATGCAAGGCCAAAAATGACATTTGTAGCA472387397GCTCCAGTGCGGCAAGAATCAGCAACATCTTGTACAGGGCTGAAAATTAGTC
Sequence 3701 from patent US 9551006.
KH516271.1:1426-1447
GCAATGCATACAGCCCTGTTCAAGATGTTG1426CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT
Sequence 3701 from patent US 10457952.
MO459447.1:1426-1447
GCAATGCATACAGCCCTGTTCAAGATGTTG1426CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT
m.07.E14.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence.
CK652175.1:217-238
GCAATGCATACAGCCCTGTTCAAGATGTTG217CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT
m.09.C6.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence.
CK652538.1:223-244
GCAATGCATACAGCCCTGTTCAAGATGTTG223CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT
43 Cassava root cDNA library Manihot esculenta cDNA 5' similar to vacuolar proton inorganic pyrophosphatase (H+ PPase), mRNA sequence.
DN740360.1:396-417
GCAATGCATACAGCCCTGTTCAAGATGTTG396CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTCCAGTGCGGCAAGAATCAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTCCAGTGCGGCAAGAATCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.342 | 0.333 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCCAGTGCGGCAAGAATCAG&k=0&no_gap=0&offset=0&limit=50
0.618 | 0.276 | search_minus_done; http://172.18.8.135:50400/match?q=CTGATTCTTGCCGCACTGGAGC&k=0&no_gap=0&offset=0&limit=49
0.621 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).