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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:52:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens BAC clone RP11-183F15 from 2, complete sequence.
AC092838.4:51975-51993
AAACAATAGCATCTCCTCTGAGCTACCTGT51975GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG
Homo sapiens DNA, chromosome 2, nearly complete genome.
AP023462.1:43423256-43423274
AAACAATAGCATCTCCTCTGAGCTACCTGT43423256GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG
Homo sapiens isolate CHM13 chromosome 2.
CP068276.2:43382516-43382534
AAACAATAGCATCTCCTCTGAGCTACCTGT43382516GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG
Homo sapiens isolate NA24385 chromosome 2.
CP139519.1:43392724-43392742
AAACAATAGCATCTCCTCTGAGCTACCTGT43392724GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG
Homo sapiens isolate NA24385 chromosome 2.
CP139542.1:43408309-43408327
AAACAATAGCATCTCCTCTGAGCTACCTGT43408309GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG
Podarcis lilfordi genome assembly, chromosome: 10.
OX395135.1:36304144-36304162
ATCCACCCATGTCTTTAAAGTGGAATGTGG36304144GGAGGAGTCTGCAAATGCCCATGTCCCAGTTCATTCAAAAAATTTGGTG
Eukaryotic synthetic construct chromosome 2.
CP034498.1:43594297-43594315
AAACAATAGCATCTCCTCTGAGCTACCTGT43594297GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG
Eukaryotic synthetic construct chromosome 2.
CP034523.1:43594297-43594315
AAACAATAGCATCTCCTCTGAGCTACCTGT43594297GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG
Ipomoea nil cDNA clone:jmsf36a04, 5' end.
CJ746960.1:247-265
AGTTGTGCCTTCTCTAGCTGCCTACGGTAG247GGAGGAGTCTGCAAATGCCTCTAGAGCTTGGATTTCTGGTCTCTTTGCT
BJ02028B09 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO908207.1:47-65
TAAAGGATATGGCTTTGTCCAGTTTGGGTC47GGAGGAGTCTGCAAATGCCGCTATTGAGAAGCTTAATGGGATCATGGTT
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:10056763-10056781
TAAAGAATATGATTTTGTCCAGTTTGAATC10056763GGAGGAGTCTGCAAATGCCGCTAATAAGAAGTTTAATGGGACCATGGGT
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:130660917-130660935
TAAAGGATATGACTTTGTCTAGTTTGGGTC130660917GGAGGAGTCTGCAAATGCCGCTATTGAGAAGCTTAATGGGACCATTGTT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 2.
CP124730.1:131476742-131476760
TAAAGGATATGACTTTGTCTAGTTTGGGTC131476742GGAGGAGTCTGCAAATGCCGCTATTGAGAAGCTTAATGGGACCATTGTT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:10376537-10376555
TAAAGAATATGATTTTGTCCAGTTTGAATC10376537GGAGGAGTCTGCAAATGCCGCTAATAAGAAGTTTAATGGGACCATGGGT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR812265.1:180151048-180151066
TGATGATGCTCGGGATTCAGACAATGAGAT180151048GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828112.1:165300884-165300902
TGATGATGCTCGGGATTCAGACAATGAGAT165300884GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG
Hordeum vulgare genome assembly, chromosome: 5H.
OX459913.1:175599750-175599768
TGATGATGCTCGGGATTCAGACAATGAGAT175599750GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG
Hordeum vulgare genome assembly, chromosome: 5H.
OX459934.1:176622834-176622852
TGATGATGCTCGGGATTCAGACAATGAGAT176622834GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG
Hordeum vulgare genome assembly, chromosome: 5H.
OX460023.1:173533636-173533654
TGATGATGCTCGGGATTCAGACAATGAGAT173533636GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG
Hordeum vulgare genome assembly, chromosome: 5H.
OX460072.1:175879052-175879070
TGATGATGCTCGGGATTCAGACAATGAGAT175879052GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG
Hordeum vulgare genome assembly, chromosome: 5H.
OX460170.1:177488109-177488127
TGATGATGCTCGGGATTCAGACAATGAGAT177488109GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG
Hordeum vulgare genome assembly, chromosome: 5H.
OX460282.1:172263786-172263804
TGATGATGCTCGGGATTCAGACAATGAGAT172263786GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737418.1:14623008-14623026
TGATGATGCTCGTGATTCGGACGATGAGAT14623008GGAGGAGTCTGCAAATGCCTTCTATGAAATGCTGGAGTCTTCAAACCGT
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737613.1:13833646-13833664
TGATGATGCTCGTGATTCGGACGATGAGAT13833646GGAGGAGTCTGCAAATGCCTTCTATGAAATGCTGGAGTCTTCAAAATGT
Sphagnum contortum genome assembly, chromosome: 5.
OY987280.1:18291210-18291228
GGTGGGTGGTCTTTGGGGTTTGATCGCTGG18291210GGAGGAGTCTGCAAATGCCAAATATCTATACTTCATGAACTGTGTATAG
Lymantria dispar genome assembly, chromosome: Z.
OY755125.1:42348494-42348512
TACATTATCTAAGGCGATCGATGCCATTGG42348494GGAGGAGTCTGCAAATGCCCAGGGCCTAAAACGAGTCATCACAACAGTT
Acomys kempi genome assembly, chromosome: 15.
OU015369.1:44668333-44668351
TTAAACTCAAGGGGCTGCTGGGGGTGGGGG44668333GGCATTTGCAGACTCCTCCTTGGCTGTGCTGAAACTCTACCATGAGGTC
Acomys dimidiatus genome assembly, chromosome: 15.
OU015388.1:46201111-46201129
CTGGGAGGTGGGGGTGGGGGTGGGGCGGGT46201111GGCATTTGCAGACTCCTCCTTGGCTGTGCTGAAACTCTATCATGAGGTC
Sequence 12 from Patent WO03093310.
AX951695.1:218862-218880
CAATTCTAAACAATTTATAATTTTGCCAAA218862GGCATTTGCAGACTCCTCCACAGGTAGCTCAGAGGAGATGCTATTGTTT
JP 2006510344-A/6: Novel nucleic acid sequences and proteins of tumors and neoplasias of the thyroid gland.
DD349238.1:218862-218880
CAATTCTAAACAATTTATAATTTTGCCAAA218862GGCATTTGCAGACTCCTCCACAGGTAGCTCAGAGGAGATGCTATTGTTT
Sequence 12 from Patent WO2003093310.
GN374938.1:218862-218880
CAATTCTAAACAATTTATAATTTTGCCAAA218862GGCATTTGCAGACTCCTCCACAGGTAGCTCAGAGGAGATGCTATTGTTT
JP 2006518991-A/151: Novel Compositions and Methods in Cancer.
HV186521.1:198584-198602
CAATTCTAAACAATTTATAATTTTGCCAAA198584GGCATTTGCAGACTCCTCCACAGGTAGCTCAGAGGAGATGCTATTGTTT
TSA: Capsicum annuum MGMT_Contig1433, mRNA sequence.
JW051677.1:1024-1042
AACCATGATCCCATTAAGCTTCTCAATAGC1024GGCATTTGCAGACTCCTCCGACCCAAACTGGACAAAGCCATATCCTTTA
TSA: Capsicum annuum MGMT_Contig27872, mRNA sequence.
JW078116.1:3066-3084
AACAATGGTCCCATTAAGCTTCTCAATAGC3066GGCATTTGCAGACTCCTCCGACCCAAACTAGACAAAGTCATATCCTTTA
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:196029608-196029626
AACCATGATCCCATTAAGCTTCTCAATAGC196029608GGCATTTGCAGACTCCTCCGACCCAAACTGGACAAAGCCATATCCTTTA
Ipomoea trifida cultivar NCNSP0306 chromosome 12.
CP025655.1:17135448-17135466
AGCAAAGAGACCAGAAATCCAAGCTCTAGA17135448GGCATTTGCAGACTCCTCCCTACCGTAGGCGGCAAGAGAAGGCACAACT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:200434363-200434381
AACCATGATCCCATTAAGCTTCTCAATAGC200434363GGCATTTGCAGACTCCTCCGACCCAAACTGGACAAAGCCATATCCTTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGAGGAGTCTGCAAATGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGGAGTCTGCAAATGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.223 | 0.214 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGGAGTCTGCAAATGCC&k=0&no_gap=0&offset=0&limit=50
0.412 | 0.190 | search_minus_done; http://172.18.8.135:50400/match?q=GGCATTTGCAGACTCCTCC&k=0&no_gap=0&offset=0&limit=24
0.419 | 0.007 | cgi_end;

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