GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:57:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GR__Ea39G21.r GR__Ea Gossypium raimondii cDNA clone GR__Ea39G21 3', mRNA sequence.
CO077579.1:36-55
CAAATCATATTACAAAAGATCGGTTTAGAA36GGCACCTTGGAATACATCTCTGATTTGCTCTTCAGCGTGAAGAAGAAGAA
CM053B12 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR457242.1:260-279
ATCCATTTGAGACGAAAGATGGGAGTAGAA260GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
GH_LSL06F05.f GH_LSL Gossypium hirsutum cDNA clone GH_LSL06F05 5', mRNA sequence.
DV849081.1:160-179
AATCATATATTACAAAAGATGGGAGTAGAA160GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
GH_TMIRS_153_C04_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW511432.1:173-192
AATCATATATTACAAAAGATGGGAGTAGAA173GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
mhczaa0_021423.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_021423.z1, mRNA sequence.
JG837502.1:336-355
CAAATCATATTACAAAAGATGGGAGTAGAA336GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
mhczaa0_025134.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_025134.z1, mRNA sequence.
JG838242.1:348-367
CAAATCATATTACAAAAGATGGGAGTAGAA348GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
B06-GC3921 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK801559.1:216-235
CAAATCATATTACAAAAGATGGGAGTAGAA216GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
C09-GC7371 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK803722.1:48-67
CAAACCATATTACAAAAGATGGGAGTAGAA48GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
B08-GC1122 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK804246.1:53-72
CAAATCATATTACAAAAGATGGGAGTAGAA53GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
C05-GC3934 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK809123.1:48-67
CAAATCATATTACAAAAGATGGGAGTAGAA48GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
F10-GC10934 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810472.1:216-235
CAAATCATATTACAAAAGATGGGAGTAGAA216GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:7066601-7066620
CAAATCATATTACAAAAGATGGGAGTAGAA7066601GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:11248452-11248471
CAAATAATATTGCAAAAGATGGGAGTAGAA11248452GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
Microcos paniculata chromosome 6b.
CP131452.1:26378373-26378392
AAGGTAAAACAACAAAAAATGGGAGTTGAA26378373GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
Microcos paniculata chromosome 6a.
CP131461.1:26550093-26550112
AAGGTAAAACAACAAAAAATGGGAGTTGAA26550093GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA
Theobroma grandiflorum isolate C1074 chromosome 8.
CP142126.1:20731030-20731049
CATCAGAAGTAAAAGGAAATGGGAGTTGAA20731030GGCACCTTGGAATACATCTCTGATTTGCTCAGCAGCGTGAAGAAGAAAAA
Theobroma cacao genome assembly, chromosome: 8.
OY284465.1:18741877-18741896
CATCAGAAGTAAAAGAACATGGGAGTTGAA18741877GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAAAA
Hibiscus tridactylites genome assembly, chromosome: 9.
OY288273.1:88012617-88012636
TAAGAAAGTTGATAAAAGATGGGAGTGGAA88012617GGCACCTTGGAATACATCTCCGATTTGCTTAGCAGCGTGAAGAAGAAAAA
GH_TMIRS_153_C04_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW511433.1:452-471
TTCTTCTTCTTCACGCTGCTAAGCAAATCA452GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATATGATT
rayctn0_0134_E08.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO099568.1:478-497
TTCTTCTTCTTCACGCTGCTAAGCAAATCA478GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATGATTTG
Gossypioides kirkii clone GKH058K14-jmr, complete sequence.
AC243092.1:109348-109367
TTCTTCTTCTTCACGCTGCTAAGCAAATCA109348GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTGATTTGAAGGATTAG
Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.
AC243121.1:81532-81551
TTCTTCTTCTTCACGCTGCTAAGCAAATCA81532GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATGATTTG
Gossypioides kirkii chromosome KI_01.
CP032244.1:34162222-34162241
TTCTTCTTCTTCACGCTGCTAAGCAAATCA34162222GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTGATTTGAAGGATTAG
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:51547903-51547922
TTCTTCTTCTTCACGCTGCTAAGCAAATCA51547903GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATGATTTG
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:118680418-118680437
TTCTTCTTCTTCACGCTGCTAAGCAAATCA118680418GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATGATTTG
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:121655558-121655577
TTCTTCTTCTTCACGCTGCTAAGCAAATCA121655558GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATACGATTTG
Theobroma cacao isolate Sca6 chromosome 8.
CP139298.1:5736260-5736279
TTTTTCTTCTTCACGCTGCTAAGCAAATCA5736260GAGATGTATTCCAAGGTGCCTTCAACTCCCATGTTCTTTTACTTCTGATG
Corchorus olitorius cultivar Sudan Green microsatellite JROm290 sequence.
KT889645.1:291-310
TTCTTCTTCTTGACGCTGCTAAGCAAATCA291GAGATGTATTCCAAGGTGCCTTCAACTCCCATTTTTTGTTACTGTAAGAA
Theobroma cacao genome assembly, chromosome: VIII.
LT594795.1:5655900-5655919
TTTTTCTTCTTCACGCTGCTAAGCAAATCA5655900GAGATGTATTCCAAGGTGCCTTCAACTCCCATGTTCTTTTACTTCTGATG
Theobroma cacao genome assembly, chromosome: 8.
OY284445.1:5761450-5761469
TTTTTCTTCTTCACGCTGCTAAGCAAATCA5761450GAGATGTATTCCAAGGTGCCTTCAACTCCCATGTTCTTTTACTTCTGATG
Theobroma cacao genome assembly, chromosome: 8.
OY284455.1:5724233-5724252
TTTTTCTTCTTCACGCTGCTAAGCAAATCA5724233GAGATGTATTCCAAGGTGCCTTCAACTCCCATGTTCTTTTACTTCTGATG
Hibiscus tridactylites genome assembly, chromosome: 4.
OY288268.1:13433147-13433166
TTTTTCTTCTTCATGCTGCTAAGCAAATCG13433147GAGATGTATTCCAAGGTGCCTTCCACTCCCATCTTTTATCAACTTTCTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGCACCTTGGAATACATCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCACCTTGGAATACATCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.084 | 1.075 | search_plus_done; http://172.18.8.135:50400/match?q=GGCACCTTGGAATACATCTC&k=0&no_gap=0&offset=0&limit=50
1.342 | 0.259 | search_minus_done; http://172.18.8.135:50400/match?q=GAGATGTATTCCAAGGTGCC&k=0&no_gap=0&offset=0&limit=32
1.352 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).