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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:48:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-099A04, 3' end sequence.
DK552996.1:92-115
CTTTGGTGTTGTGTTGCTGAGCTGTTAACC92GGTAGAAAACCAATCGAACCAAGAAGATCATCTGGTGAAGGAAATTTAGTTGTT
46RDOAG_UP_023_F02_30DEC2004_006 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
EE531746.1:346-369
TTTGGTGTTGTGTTGCTTGAGCTGTTAACC346GGTAGAAAACCAATCGAACCAAGAAGATCATCTGGTGAAGGAAATTTAGTTGTT
BR057266 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-005D05 5', mRNA sequence.
EX072622.1:234-257
TTTGGTGTTGTGTTGCTTGAGCTGTTAACC234GGTAGAAAACCAATCGAACCAAGAAGATCATCTGGTGAAGGAAATTTAGTTGTT
Brassica rapa subsp. pekinensis male sterility linked AFLP marker P01SCR01 genomic sequence.
FJ851467.1:1-24
1GGTAGAAAACCAATCGAACCAAGAAGATCATCTGGTGAAGGAAATTTAGTTGTT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_22000.
FX695607.1:523-546
AACAACTAAATTTCCTTCACCAGATGATCT523TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_9489.
FX731655.1:557-580
AACAACTAAATTTCCTTCACCAGATGATCT557TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:51337888-51337911
AACAACTAAATTTCCTTCACCAGATGATCT51337888TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:14474034-14474057
AACAACTAAATTTCCTTCACCAGATGATCT14474034TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:8896003-8896026
AACAACTAAATTTCCTTCACCAGATGATCT8896003TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:45206071-45206094
AACAACTAAATTTCCTTCACCAGATGATCT45206071TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica rapa genome, scaffold: A04.
LR031576.1:8153870-8153893
AACAACTAAATTTCCTTCACCAGATGATCT8153870TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:44413067-44413090
AACAACTAAATTTCCTTCACCAGATGATCT44413067TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:8399544-8399567
AACAACTAAATTTCCTTCACCAGATGATCT8399544TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTAGAAAACCAATCGAACCAAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTAGAAAACCAATCGAACCAAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.318 | 0.309 | search_plus_done; http://172.18.8.135:50400/match?q=GGTAGAAAACCAATCGAACCAAGA&k=0&no_gap=0&offset=0&limit=50
0.379 | 0.061 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTGGTTCGATTGGTTTTCTACC&k=0&no_gap=0&offset=0&limit=46
0.385 | 0.006 | cgi_end;

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