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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:29:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 14 from patent US 7557201.
GP469017.1:373-392
TATGCAGTCAATAGCTATTTCCAAAAGAAA373GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
GA__Eb0041A15f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0041A15f, mRNA sequence.
BG447196.1:379-398
TATGCAGTCAATAGCTATTTCCAAAAGAAA379GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
GR__Ea38J21.r GR__Ea Gossypium raimondii cDNA clone GR__Ea38J21 3', mRNA sequence.
CO077019.1:372-391
TATGCAGTCAATAGCTATTTCCAAAAGAAA372GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
GR__Ea12F19.f GR__Ea Gossypium raimondii cDNA clone GR__Ea12F19 5', mRNA sequence.
CO091718.1:375-394
TATGCAGTCAATAGCTATTTCCAAAAGAAA375GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
GR__Eb021M17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb021M17 3', mRNA sequence.
CO119076.1:341-360
TATGCAGTCAATAGCTATTTCCAAAAGAAA341GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
CM076H08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR459497.1:320-339
TATGCAGTCAATAGCTATTTCCAAAAGAAA320GGTCAAGCTCAAGGAAGCTGTGATATTTCAGGCACTGCTACTGTTAGCGT
EST1059555 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT548915.1:370-389
TATGCAGTCAATAGCTATTTCCAAAAGAAA370GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
EST1076794 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566154.1:366-385
TATGCAGTCAATAGCTATTTCCAAAAGAAA366GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
UFL_650_41 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES805324.1:198-217
TATGCAGTCAATAGCTATTTCCAAAAGAAA198GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
UFL_648_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES807990.1:57-76
TATGCAGTCAATAGCTATTTCCAAAAGAAA57GGTCAAGCTCAAGGAAGCTGTGATTTTCAGGCACTGCTACTGTTAGCGTT
UFL_364_93 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES820514.1:342-361
TATGCAGTCAATAGCTATTTCCAAAAGAAA342GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
UFL_340_28 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES823631.1:379-398
TATGCAGTCAATAGCTATTTCCAAAAGAAA379GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
UFL_408_36 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832073.1:371-390
TATGCAGTCAATAGCTATTTCCAAAAGAAA371GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
UFL_462_44 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832823.1:342-361
TATGCAGTCAATAGCTATTTCCAAAAGAAA342GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
UFL_109_62 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES844332.1:379-398
TATGCAGTCAATAGCTATTTCCAAAAGAAA379GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
sg018E06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV494591.1:187-206
TATGCAGTCAATAGCTATTTCCAAAAGAAA187GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
H02_F8_016 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX170427.1:434-453
TATGCAGTCAATAGCTATTTCCAAAAGAAA434GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
E12-083E12 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793741.1:304-323
TATGCAGTCAATAGCTATTTCCAAAAGAAA304GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
A01-50A01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793884.1:443-462
TATGCAGTCAATAGCTATTTCCAAAAGAAA443GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
ndcxf0_0016_G02.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ383866.1:393-412
TATGCAGTCAATAGCTATTTCCAAAAGAAA393GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
ndcxf0_0020_B06.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ384163.1:393-412
TATGCAGTCAATAGCTATTTCCAAAAGAAA393GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
ndcxf0_0032_A12.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ385067.1:391-410
TATGCAGTCAATAGCTATTTCCAAAAGAAA391GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
ndcxf0_0037_F10.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ385415.1:385-404
TATGCAGTCAATAGCTATTTCCAAAAGAAA385GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
Aeschynomene afraspera mRNA 5-prime sequence from clone ADL0ACA15YK20 (ADL0ACA15YK20CM1).
LO003523.1:418-437
TATGCAGTTAATAGCTATTTCCAGAGAAAG418GGTCAAGCTCAAGGAAGCTGTGATTTTGCTGGTTCTGCTGCTCCTACCCC
Gossypioides kirkii chromosome KI_12.
CP032254.1:8636355-8636374
TATGCAGTCAATAGCTATTTCCAAAAGAAA8636355GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
Gossypium raimondii isolate D5-4 chromosome D5_12.
CP032564.1:11844330-11844349
TATGCAGTCAATAGCTATTTCCAAAAGAAA11844330GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:13697123-13697142
TATGCAGTCAATAGCTATTTCCAAAAGAAA13697123GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT
Gossypium rotundifolium isolate GPK201 chromosome 12.
CP106733.1:8335643-8335662
TATGCAGTCAATAGCTATTTCCAAAAGAAA8335643GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT
Sphaerochaeta coccoides DSM 17374, complete genome.
CP002659.1:303705-303724
TCCCATTGCCATCGGTTATGCGCACGACCA303705GGTCAAGCTCAAGGAAGCTGGCTCCCCCGTCGTAATCACGGCACCGAGCG
Gossypium turneri isolate D10-2 chromosome D10_12.
CP032582.1:42764743-42764762
ACACTAACAGTAGCAGTGCCTGAAAAATCA42764743CAGCTTCCTTGAGCTTGACCTTTCTTTTGGAAATAGCTATTGACTGCATA
Gossypium arboreum cultivar Shixiya1 chromosome 12.
CP053561.1:74410814-74410833
ACGCTAACAGTAGCAGTGCCTGAAAAATCA74410814CAGCTTCCTTGAGCTTGACCTTTCTTTTGGAAATAGCTATTGACTGCATA
Gossypium herbaceum isolate GPA1alz chromosome 12.
CP106705.1:96177662-96177681
ACGCTAACAGTAGCAGTGCCTGAAAAATCA96177662CAGCTTCCTTGAGCTTGACCTTTCTTTTGGAAATAGCTATTGACTGCATA
Gossypium bickii isolate GPG1lz chromosome 12.
CP106716.1:99740703-99740722
ACACTAACAGTAGCAGTGCCTGAAAAATCA99740703CAGCTTCCTTGAGCTTGACCTTTCTTTTGGAAATAGCTATTGACTGCATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTCAAGCTCAAGGAAGCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTCAAGCTCAAGGAAGCTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.571 | 1.563 | search_plus_done; http://172.18.8.135:50400/match?q=GGTCAAGCTCAAGGAAGCTG&k=0&no_gap=0&offset=0&limit=50
1.681 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCTTCCTTGAGCTTGACC&k=0&no_gap=0&offset=0&limit=21
1.684 | 0.003 | cgi_end;

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